| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1716 |
|---|
| Symbol | |
|---|
| ID | 5297444 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 1701789 |
|---|
| End bp | 1702886 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 640769988 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001306940 |
|---|
| Protein GI | 150021586 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAT TAGAGCTTGT TAATTTATCA AAAAGATATG GAAAAAAGGT TTGGGGTGCA
AAAGATGTAA ATTTGAAGGT AAATGATGGT GAATTTGTAG TCTTCCTTGG ACCTTCTGGT
TGTGGTAAAA CTACAACTTT AAGAATGATA GCAGGTCTTG AAGAGGTAAC AGAAGGAAAG
GTTATTATTG ATGGAAAAGA TGTAACATAT CTTGAACCTA GAAAACGTGA AGTTAGTATG
GTTTTCCAAA GTTACGCTGT CTGGCCTCAC ATGACAGTGT ATGAAAATAT AGCATTTCCA
TTAAAACTTA AAAAATTTCC TTCCGAAGAA ATAGATAAAA TAGTAAGGGA AGTAGCGGAA
ATGGTTAAAA TAGAAGAACT TTTGAAAAGA TTTCCATCTC AGCTTTCTGG TGGTCAAAGA
CAGCGTGTAG CTTTGGCAAG AGCCCTTGCA GTAAAACCAA AAATATTTTT AATGGATGAA
CCACTATCTA ATCTTGATGC AAAATTGAGA GTAAAAATGA GAACAGAATT GAAAGCAATT
CATCATAAAA CTGGTGCTAC AACAATATTT GTAACACACG ATCAATCAGA AGCTATGTCA
ATGGCAGATC GCATTATCAT AATGAAAAAT GGGCGGATTG AACAAGTTGG TACACCTGAT
GATGTCTATT TTAATAGTGC AAATGTGTTT GTCGCTGGTT TTATTGGTAC TCCTCCAACG
AATTTCTTTG AAATGGAAGT TGTAAGACAA AGTGGGCGTA TTCACTTGAA AAATGAGCAT
ATTGATATAC CATTAAATGG TAAAAATGAA AAAATTGTTG AAAGTTATTC AAAAAATAAA
ATAATTGTTG GTATAAGGCC GGAAAATTTA TTGATTACTA ATAATAAGGA TAAAGCTATT
TTTACAGAAA AAATATTAGT TGTAGAACCA CAAGGTTCAC ATCAGATTAT AGCCGTTGAT
CTAGGTGAAC AGATAGTAAA AATTGTTGTT CCAGCGTTTC CAAAATATAA CCCTGATGAA
ATGATAAATG TTACATTTGA TAGTGAAAGA ATAATGCTGT TTGATATTGA GACTAAAAGC
AGGTTGGAGG AATATTAA
|
|---|
| Protein sequence | MATLELVNLS KRYGKKVWGA KDVNLKVNDG EFVVFLGPSG CGKTTTLRMI AGLEEVTEGK
VIIDGKDVTY LEPRKREVSM VFQSYAVWPH MTVYENIAFP LKLKKFPSEE IDKIVREVAE
MVKIEELLKR FPSQLSGGQR QRVALARALA VKPKIFLMDE PLSNLDAKLR VKMRTELKAI
HHKTGATTIF VTHDQSEAMS MADRIIIMKN GRIEQVGTPD DVYFNSANVF VAGFIGTPPT
NFFEMEVVRQ SGRIHLKNEH IDIPLNGKNE KIVESYSKNK IIVGIRPENL LITNNKDKAI
FTEKILVVEP QGSHQIIAVD LGEQIVKIVV PAFPKYNPDE MINVTFDSER IMLFDIETKS
RLEEY
|
|---|
| |