| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1705 |
|---|
| Symbol | |
|---|
| ID | 5298245 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 1690972 |
|---|
| End bp | 1691823 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640769977 |
|---|
| Product | ABC-type sugar transport system periplasmic component-like protein |
|---|
| Protein accession | YP_001306929 |
|---|
| Protein GI | 150021575 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGTAT TTGATGGAAA GAGGTATTTC TTACCAGTTG GCGCAGATGT TTATTTAACA
TTAATCAACA AAAAAGCTTT ACAATATAAA CCAGAAGATG TAGACATAGA AAATATTACA
TGGGAGCAGT TAGCTGAGTG GGCAAATCTT GTAGCTCAAG GTGAGGGCGA AGGTAAATTC
GCTGTTACAG GTGTTCCGAT GAAATCTCTT ATTTACCAAA TTGGTGCAAT AACATTATCT
TATGGGGGCA ACTGGCCAAA TCTTGATAAT CCTGGAGCTG TTGCAGCATG GTATCTTGTT
TATAAGATGA AAGATGCATT TGCTCCAGCG GTTCAAACAT ATGATGATAC AAGACCACCT
ATGAAAAGAG AAGAAACATG GATGACAGTT GCTCATTCTG CTCGTGTGGG AGAAGTGTAC
AAGAGCAATC CAACACAGTT TATCATTGCT CCTGCACCAA AAGGACCAGC TGGAAGAGGT
TCAGTTGCCG GAACAAGTGG ACTTGCCATT GTCAAAGGTA CAAAACACTT TGACCTTGCT
CTTAAGTTCC TTGAATACAT GACAAGACCA GATATAATTT TGAAATCACA CAAGGGTACT
GGAGGATTTA TCCCACCTGT TGATGAAGCA ATTAACTATC TTGGTGATGA TATAGAAGAT
CAAGTTGTAA AGAATGCTAT TAAAGTATTA AAAGAAGGTG TCTTGTCTTA TATCGCACCT
ACATGGAAAG ATTGGGGACA GGTGAAACTT GTTTATGATG AAATATTCAA GAAAATGATT
CTTCAAGATA AAAGATTCGA GCCTGATCTT CTTGAATTCT ACCAGATAAA AATTAACAGC
CTCAAAAAAT AA
|
|---|
| Protein sequence | MTVFDGKRYF LPVGADVYLT LINKKALQYK PEDVDIENIT WEQLAEWANL VAQGEGEGKF
AVTGVPMKSL IYQIGAITLS YGGNWPNLDN PGAVAAWYLV YKMKDAFAPA VQTYDDTRPP
MKREETWMTV AHSARVGEVY KSNPTQFIIA PAPKGPAGRG SVAGTSGLAI VKGTKHFDLA
LKFLEYMTRP DIILKSHKGT GGFIPPVDEA INYLGDDIED QVVKNAIKVL KEGVLSYIAP
TWKDWGQVKL VYDEIFKKMI LQDKRFEPDL LEFYQIKINS LKK
|
|---|
| |