| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1623 |
|---|
| Symbol | |
|---|
| ID | 5296825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 1611110 |
|---|
| End bp | 1613542 |
|---|
| Gene Length | 2433 bp |
|---|
| Protein Length | 810 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 640769900 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein |
|---|
| Protein accession | YP_001306852 |
|---|
| Protein GI | 150021498 |
|---|
| COG category | [I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1
[COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
[TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.603124 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATTG TAGTTGCTGA AGGTATAGGG TTTTGTTTTG GTGTTGAAAA CGCCGTTTCA
AAAGCAAAAG AACTTTTGAA GAAGGGATTA AGTGTTTGGA CTGATGATGA TATAGTACAT
AACAAATCAG TGATGAAAGA ACTTTACGAT ATGGGTTTAT CTAAGGAAAA AGGTGATGTG
TTTCTGGTTA GAGCTCATGG ACTGCCGAAA GATGTTTTGG ATGATTTGAA AAAAAGGTAT
AAGGTAGAGG ATTTAACTTG TAGTATTGTT AAGAATTTAT TTAAAACTGT TGCTGAGATT
GAAAAAAAAG GATACAAAAT TGTTGTCTTT GGAAAAAAAG AACATCCAGA AATGAAAGCA
TTAAAAAGTT ATTGTGAAAA TGCGACTATA ACGGATATTC CACTTCCGAT AAATGCAAAA
AGGATAGCAA TTGCTAGTCA AACAACTATG TCATATACAG ATTTTGAATT TTTTGTAAAT
AAGATTACTG AGATGTCTAA ATTTGATGAT ATTAAAATAA TTAACAGTAT TTGCAATATA
ACGTATAACC GAGAAAAGGA AGCGGAAAAG ATTTCGAAAA TAGTTGATTT AATGGTCGTA
GTTGGTGGTA AACATAGTTC AAATACAACA AAGTTGTATA AAATCTCTTC GAAATATACT
AAGAGTATGC ATATTGAATT ACCAGAAGAA TTAATTGAAT TACCCAAGGG GGTAAAGAAA
ATAGGTGTAA TAAGTGGGAC TTCTACACCG AAAAATATAG TTGAAAAAGT AATATTAAGA
TTAAAAGAAT TAGGAGGGAT GCTGCAAATG GATGGTAACT TTGAAAAACT TTTAGAAAGC
TATTTGTATG ACGACGTAAG AAGAGGAACA GAAGTTATGG GAACAGTTTT AAGAAAGGGA
GAAACAGAGC TATTTGTTAA TTTTGGTTGG AGAGCGGAGG GGATAGTTTC AAGTGATGAA
TTGGTAAAAG ATTTAAGTGA ATATAATATC GGTGATAAAT TAAAATTGTT AGTAATAAAG
ATTGATGAAG AAGACGGTAT GGCATTTCTT TCGGAAAAAA GGGTTTATCT TAAAAATATA
AGAAATATAT TGAGAGAGAA ATTTGAGAAA GGCGAAAAAG TTATTGGGAA AATAATATCA
AGAAATAAGG GTGGCTATGA TGTATTAATA GATAATGTAT TCAAGGCATT TTTACCCAAG
AGTGAATCAA TGATTTATGG AGATAATATC CCAGATTATA CTATGGAATT TAAAATAATA
AAGTTTGAAG ATAAAAGAAA ATTAAATGTA GTTGTATCGC GAAAAGCATT AGTTAAAGAA
CAAGTTGAGA GATTTTTCAA AGAGAGAAAA AAGGGAGATA TAGTGGAAGG TATTGTAAAA
AGAATAGAGG ATTTTGGTGC ATTTGTCAGG GTAGCAGAAG GTATTGAAGG TTTATTACCA
AATTCAGAAG TATCTTATGA TTATGAAATT AGCGCAATGG ATGTATTAGG TGAAGGACAA
AGTGTAAAGT TATATTTAAA GGAAATCGAT CCAACAAACA AGAAGTTAAT TTTCAGTTTA
AAAGAGTTAA TGCCAAATCC GTGGAATAAC GTTGAAAAGA AATATAAAAT TGGTGAAGTT
GTTAGTGGAA AGGTGAAAAA GATAATGCCT TATGGTTTTT TTGTTAATCT TGAACCTGGT
ATTGATGGTT TTGTGCATAT CGATGATGTA TTTTGGGGAA AAAGAGGGAA TATAAAAGAT
ATAATTAGTG AAGGTGATTT TGTTAAGTTA GTTGTAAAAG AAATAGATAA AGAAAATAAA
AAGATAAGAT TAAGTTATAA AGAAGTAAAA GGTGATCCAT GGGAAAATAT TGAGGAAAAA
TATCCATTAG GAAATGTAGT TACTGGAATT GTAAGAGTAG TATTTGATAA AGGGGTTATT
ATTGACATTG AAGAAGGAAT AAGTGGGTAT TGTCCTATTT CGGAAATTTC ATGGAATTAT
ATTTCTCATC CCACTGATGT GATTGGGGAG GGAAATAAAG TTAAAGCTGT CGTTTTAGAT
TTAGATAAGG AAAATAGAAA GATAAGGTTG AGTATAAAAA GAACAGTTGA AAATCCATGG
GAGAAATTTA AACAACAGCA CAAAGTAGGG GATATAATAA AAGTTAAATT GGTAAAGGAA
TTAAAAAATG GTTATAGTGC AAATGTAGAA GGTATTGAGG TTTATGTGCC AAAATCACAC
ATTGTTTCTG ATATTAATGT GAGTGATGAT TTAGAAGTGA AGATTATTAA TATAAAAACA
GATGGAGAGA TTTTACGAGT AGTTGTAAGT GAAAAAGAAA AAGAAAATGA AAAAGTTCTT
GACGAGATAA AAAATGAAGC TGAAAAGGAA AGATATACCT CCATTGAAAG GAAGGTAAAA
AATGGCGACA GTTCTGATAG TGGGGAAGAG TAA
|
|---|
| Protein sequence | MQIVVAEGIG FCFGVENAVS KAKELLKKGL SVWTDDDIVH NKSVMKELYD MGLSKEKGDV
FLVRAHGLPK DVLDDLKKRY KVEDLTCSIV KNLFKTVAEI EKKGYKIVVF GKKEHPEMKA
LKSYCENATI TDIPLPINAK RIAIASQTTM SYTDFEFFVN KITEMSKFDD IKIINSICNI
TYNREKEAEK ISKIVDLMVV VGGKHSSNTT KLYKISSKYT KSMHIELPEE LIELPKGVKK
IGVISGTSTP KNIVEKVILR LKELGGMLQM DGNFEKLLES YLYDDVRRGT EVMGTVLRKG
ETELFVNFGW RAEGIVSSDE LVKDLSEYNI GDKLKLLVIK IDEEDGMAFL SEKRVYLKNI
RNILREKFEK GEKVIGKIIS RNKGGYDVLI DNVFKAFLPK SESMIYGDNI PDYTMEFKII
KFEDKRKLNV VVSRKALVKE QVERFFKERK KGDIVEGIVK RIEDFGAFVR VAEGIEGLLP
NSEVSYDYEI SAMDVLGEGQ SVKLYLKEID PTNKKLIFSL KELMPNPWNN VEKKYKIGEV
VSGKVKKIMP YGFFVNLEPG IDGFVHIDDV FWGKRGNIKD IISEGDFVKL VVKEIDKENK
KIRLSYKEVK GDPWENIEEK YPLGNVVTGI VRVVFDKGVI IDIEEGISGY CPISEISWNY
ISHPTDVIGE GNKVKAVVLD LDKENRKIRL SIKRTVENPW EKFKQQHKVG DIIKVKLVKE
LKNGYSANVE GIEVYVPKSH IVSDINVSDD LEVKIINIKT DGEILRVVVS EKEKENEKVL
DEIKNEAEKE RYTSIERKVK NGDSSDSGEE
|
|---|
| |