| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1372 |
|---|
| Symbol | |
|---|
| ID | 5298374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 1375201 |
|---|
| End bp | 1375992 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 640769645 |
|---|
| Product | glutamate racemase |
|---|
| Protein accession | YP_001306604 |
|---|
| Protein GI | 150021250 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0796] Glutamate racemase |
|---|
| TIGRFAM ID | [TIGR00067] glutamate racemase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAG GTCTGTTTGA TTCAGGGATT GGGGGAATTT CTGTTTTAAA GAAATTAACA
TATATTAATG GAGCACATTA TATATATATT GCCGATACTG AAAGGGCCCC ATATGGGTTG
CGTACATCGG AGGCTCTCGA ATCCTTTGTT TGGGAATTTG TTGATTTTTT TCATAAAAAG
AAGGTTAACG AAATATTTGC AGCTTGCAAT ACTACTGACT CGATAATATT GGAAAATAAT
TTAGATTTGG TGATAAAATA TAATAGTATA ATACGAGCAG GTGTTTCTGC TGCCAAAAGT
AGCAAGGTTG GAGTAATTGG AACTAATGTA ACAATAAAAA ATGGAAGTTA TAGAAGATAT
TTAGAAGTTG AAGGGAAGGA AGTTTATCAA AAGGCTACCC AACTTTTTGT TTCTTTAGTT
GAAGAAGGAG TATTTTATGG AAGAATGGTA GAAGCGATTG CAAATTATTA TTTACTACCA
TTAAAAAAAG AAAATGTCAA AGAACTCATA CTTGGTTGTA CACATTTTCC ATTTTTAAAG
GGAATTATTT CTAGGGTTTT ACCTAAGGTA AGGATAATTG ATCCAGCTGA GGAATTATCA
AAACTTTTGG TAAAGAATAA TACTAGAAGA CCATTTGTTG AATTTTATGT TACAGGTGAT
CCAAAAGAAT TTGAACGAAA GCTAAAGCGT ATAAATTTTA GAGTAGCGTA TACCATTAAT
AAGTTTAAAA TAAGAAAGGT GGTTAGTGTT GAAAAATTTA GTGGTTTTGA CGGGGTTGTC
AGGAGCGGGT AA
|
|---|
| Protein sequence | MKIGLFDSGI GGISVLKKLT YINGAHYIYI ADTERAPYGL RTSEALESFV WEFVDFFHKK
KVNEIFAACN TTDSIILENN LDLVIKYNSI IRAGVSAAKS SKVGVIGTNV TIKNGSYRRY
LEVEGKEVYQ KATQLFVSLV EEGVFYGRMV EAIANYYLLP LKKENVKELI LGCTHFPFLK
GIISRVLPKV RIIDPAEELS KLLVKNNTRR PFVEFYVTGD PKEFERKLKR INFRVAYTIN
KFKIRKVVSV EKFSGFDGVV RSG
|
|---|
| |