| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1363 |
|---|
| Symbol | |
|---|
| ID | 5297978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 1368370 |
|---|
| End bp | 1369368 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 640769636 |
|---|
| Product | polyprenyl synthetase |
|---|
| Protein accession | YP_001306595 |
|---|
| Protein GI | 150021241 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.36149 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATTTG AAGAATTTAG GATAAAACAT GTAAAAAAAA TTGATGAAGC TATTGGAAAA
GTAATTGACG AAAATAGTTT AAACAGTCCA GTAGGAAATT TGGTAGAAGA ATTAAAGAAA
TTTTGTTTAA GGCCTGGAAA AAGAATTCGA CCTTTATTGT TTATTTTAGG GGTAGAGGGA
TTTGGAGGAA AGGTTGATGA AACAGTATAC AAGATTGCCG CAACTATTGA AATAATGCAT
TCTTTTTTGT TGATTCATGA TGATATAATG GACCAATCGG AGTTAAGAAG AGGACAACCG
TCTATGCATA ATTTGCTAGC AAATAAATTC AAGGATAGGA GTTTTAACCC GAAAATTGGT
GAGGATTTGG CTTTAGTACT AGGTGATATA TTATTTTTTA TTGGTTTAAG GGTTTTAAGT
AGGTTAAATA TACCTTACTT TTTTTTGGAA AAGTTTTCTG AGTGTTATAT TAATACAGGA
TATGGCCAGA TTTTGGATGT GATTTATTCT ATGAATAGAA ATTATGTGAG AAGTGAAAAA
ATATCTTTAG AAATTTCTAA ACTGAAAACA GCATATTATA CGTTTTTTTA TCCATTTTAT
CTGGGAACGG TTTTTACGGG TGGAAATGTT GGTAGGAAAT TAATTGAAGA TATTATGATT
CCTGCGGGGA TTGCTTTTCA AATTAGAGAT GATATTATTA GTACCTTTGA TGAAAAATCG
GGAAAATCAA ATCTTTCAGA TATTTTGGAA GGTAAAGTAA CGGCTTTGAT AGATTTTGGG
GAATATGACG AAAAATTCTT TGAGATTTAT TTTAAGCCTG AAAAAACAAT TGAAGAGATA
AATTATATAA TTGAATGTAT GAAAAAAAGT GGAGCAATTG AAAGTGCGAA AAAAGTTATG
GAAGAATTAA TAAAAAAAGC ATTTAAAAAT TTGGAAAAAA TTAACTTTGA AAGGAAGGAT
GTATTAAAAG ACTTAATAGA CAGATTAAGG AGAGATTAG
|
|---|
| Protein sequence | MIFEEFRIKH VKKIDEAIGK VIDENSLNSP VGNLVEELKK FCLRPGKRIR PLLFILGVEG
FGGKVDETVY KIAATIEIMH SFLLIHDDIM DQSELRRGQP SMHNLLANKF KDRSFNPKIG
EDLALVLGDI LFFIGLRVLS RLNIPYFFLE KFSECYINTG YGQILDVIYS MNRNYVRSEK
ISLEISKLKT AYYTFFYPFY LGTVFTGGNV GRKLIEDIMI PAGIAFQIRD DIISTFDEKS
GKSNLSDILE GKVTALIDFG EYDEKFFEIY FKPEKTIEEI NYIIECMKKS GAIESAKKVM
EELIKKAFKN LEKINFERKD VLKDLIDRLR RD
|
|---|
| |