| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1016 |
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| Symbol | |
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| ID | 5296580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | - |
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| Start bp | 1040769 |
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| End bp | 1043411 |
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| Gene Length | 2643 bp |
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| Protein Length | 880 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 640769300 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_001306262 |
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| Protein GI | 150020908 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4724] Endo-beta-N-acetylglucosaminidase D |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAC TGGTATTTAT TCTTTTAATA ATTTTCTCTA TATTTGTCTA CGCAATCCCG
GAAAGCTCAT ATTGGTATCC GAACGATTTA TTGGATTGGA AATCTGATCC GAATATCGTT
TATAACATAT CCCACATACC ACTTGCAAAA AGAATATACG CCGAACCAAT TACAAACTTT
GCAGAAAAAG ATGTAAAAAT AATGGTTTTA TCCATTATGA ATCCTTCTAC GAGTGGTATG
CCATCACAAG GAAGTAATAA CTCCTTTAAA ACATATCCCT TTTCCTTCTG GCAATACGTT
GATTATCTTG TTGCATGGGC TGGATCAGCT GGCGAAGGAA TTATCGTCCC TCCAAGTGCA
GATGTTATCG ACCTTGCACA TAAAAACGGA GTTTACGTTC TTGGAACTAT ATTCTTCCCT
CCAAACATAT ATGGTGGAAG AAGAAATTGG GTTGATCAAC TCTTAAAAGA GGAAAACGGA
AAATTTATAA TTGCAGATAA ACTTATAGAA GTAGCCGAAA CATATGGTTT TGATGGTTGG
TTTATTAACC AAGAAACTAA AGGTTGCAAT GAAACCCATG TAAAAAAGAT GATAAATTTT
TTAAACTACC TTAAAGAAAA AGCTCCTTGG ATGAAGGTAG TCTGGTATGA TGCCATGTCA
AAAATTGGTG CAATAGAATG GCAAGGAGAA TTAAACGAAA ACAATGTTGT GTATATAGTG
AACAACGACA AAAAGTTAGT AGATGCCATC TTTTTGGATT TTAGGTGGCA ATCCTTAAAA
AGACCTGAAA CAATTGAAAA TACGTTAAAT ACCATGAAGA AATACAACCT AAAAAAAGAT
GATATTTTCG TAGGTTTTGA TCTCCAGGCA AATGGATTCT ACACATACTC AAACTGGCCA
AAAATAATCG ACGAAAATGG AAAATTAAAA GTTTCTTTAG GATTTTACTG TCCAAGCTGG
GCATATTATT CAACAAAGAA CATTTCAAAA TTCTGGCAAA ATGAAGAGAC ACTTTGGATT
GCAGACCATC CAGTGCTAAC TTATAACGGA AAAGAAGAAT TTTTCAAAAT AAAATGGAAT
GAAAACTACA AACAATACAG ATGGCAAGCT CCTTCAAAAT TTGTTGTAGA AAAATCCCCA
ATAACTTCCC TCCCATTTAT TACCCATTTT AATGCAGGGC ATGGATATGC ATTTTACGTT
GACGGAAAAA AACTTTCCAA TATCCCTTGG AACAACAGAA GTCTAATGGA CATCTTTCCA
ACCTATAGAT GGAAAGTAAC TGGCCCTATT CCAAAAATTT TTGTTGATTA TTCAACTGCA
TATTACGGCG GAAGCTCACT TAAAATCCAA GGTAATTTGG AAAAAGGCGA AAGAACCTTA
ATAACTTTGT ATGCAGCAGA ACTTTATATT GAAAATCCAA CCATCCTTGA AACGGTTATA
AAGGGAACAG GAAATATAAA AACCAGAGTC ATACTCACTT TTGAAAACAA CAAAAACAAA
AGTTATGAGT TAAAATTATT TGATGATTGG GTAAAGACCA TTTACAACTT AGAAACAGAA
AAAAACATTA AATACATCTC TTTTGAGATA GAAGGTTCAA CCAAGACGTC ATACAACATA
AATATAGGTA AAATAGGAAT AATACCTGTA AAAAATGAAA AGGTAAGAAA AGTTACGAAC
GTAAAAATTG ATGAATTAAC ATTCAAAGAA GGTTTATACG CACAAATGAA ACTCCACTGG
AACAAATCAA ATGCAGAATA TTACGAAATC TACAGGATAA AAAATGGAAA AAGAGAATTT
GTCTGGGCAA CATATAATAA CTACACGTAC ATATCTGAAA TAACAAGGTA CGGAAAAGAA
ACCTCTACCA CTCTTGAAAT AGTTGGAGTT TCCAAAGATA TGCAAAGATC CATTCCAACT
AAAATATCTT TCAATTGGCC ACCTTACCCC AAACCCAAGG CAAACTTTGA GGTAAGTAAT
ACAATTATTC TTCCAAATAG CAGTGTAACA TTTTTTGATA AATCTTCAAA AGTAACTGAA
AAATGGCTAT GGATACTTCC AGGTGCTACT CCAAATGTTT CATACGAGAA AAATCCCGTT
GTAACTTATA AAAAAGAGGG AATATATCCA GCAATATTGG TTGCCATGAA CTCCGAAGGA
GAAGATGTGA AAATATACAA TCCTCTGATA GTGGTAACAA CAAAGGCAAA AAATATTAAA
AACCTTGCTT TAAACAAAAA AACTTATGCA AGCTCAAACG TTCCTACTGA AAAACCTTCT
ATGGCAGTCG ATGGAACAGT TGAAAATAAC AGCAAATGGT GTGCTGTAGG AGAACTTCCA
CATTGGTTGG TAATAGACTT TGGTAAAGAA GTAATAATTA GCAGCGTAAT AATAAAACAC
GCCGAGGCTG GCCACGAATC GCCTGATTGG AACACAAAAG ACTTTAGATT ACAAGCAAGT
GATGATGGAA AAAGCTGGAA AGATATATCC GTTGTTAAGG GTAATACAAA AGGTATTACC
AAACATTCAT TTGCCCCTGT AAAAACTAGA TATTTTAGAC TTTTCGTTGA AACACCAACA
CAAACTGGAG ATAAAGCAGC AAGGATTTAC GAAGTTGAAG TTTACGGACT TGAATCATTT
TAA
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| Protein sequence | MKKLVFILLI IFSIFVYAIP ESSYWYPNDL LDWKSDPNIV YNISHIPLAK RIYAEPITNF
AEKDVKIMVL SIMNPSTSGM PSQGSNNSFK TYPFSFWQYV DYLVAWAGSA GEGIIVPPSA
DVIDLAHKNG VYVLGTIFFP PNIYGGRRNW VDQLLKEENG KFIIADKLIE VAETYGFDGW
FINQETKGCN ETHVKKMINF LNYLKEKAPW MKVVWYDAMS KIGAIEWQGE LNENNVVYIV
NNDKKLVDAI FLDFRWQSLK RPETIENTLN TMKKYNLKKD DIFVGFDLQA NGFYTYSNWP
KIIDENGKLK VSLGFYCPSW AYYSTKNISK FWQNEETLWI ADHPVLTYNG KEEFFKIKWN
ENYKQYRWQA PSKFVVEKSP ITSLPFITHF NAGHGYAFYV DGKKLSNIPW NNRSLMDIFP
TYRWKVTGPI PKIFVDYSTA YYGGSSLKIQ GNLEKGERTL ITLYAAELYI ENPTILETVI
KGTGNIKTRV ILTFENNKNK SYELKLFDDW VKTIYNLETE KNIKYISFEI EGSTKTSYNI
NIGKIGIIPV KNEKVRKVTN VKIDELTFKE GLYAQMKLHW NKSNAEYYEI YRIKNGKREF
VWATYNNYTY ISEITRYGKE TSTTLEIVGV SKDMQRSIPT KISFNWPPYP KPKANFEVSN
TIILPNSSVT FFDKSSKVTE KWLWILPGAT PNVSYEKNPV VTYKKEGIYP AILVAMNSEG
EDVKIYNPLI VVTTKAKNIK NLALNKKTYA SSNVPTEKPS MAVDGTVENN SKWCAVGELP
HWLVIDFGKE VIISSVIIKH AEAGHESPDW NTKDFRLQAS DDGKSWKDIS VVKGNTKGIT
KHSFAPVKTR YFRLFVETPT QTGDKAARIY EVEVYGLESF
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