| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1013 |
|---|
| Symbol | |
|---|
| ID | 5297797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 1038054 |
|---|
| End bp | 1038992 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640769297 |
|---|
| Product | glycosidase, PH1107-related |
|---|
| Protein accession | YP_001306259 |
|---|
| Protein GI | 150020905 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2152] Predicted glycosylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATTCCTT GGGAAGAAAG ACCAAATAGT TCAACTGAAA TCTTGTGGAG ATATTCCAAA
AACCCGGTTA TAAAAAGAAA TGCTGCAAAA AATTCAAATA GTATTTTTAA CAGCGCGATA
GTAAAGCACA AAGATGGTTT TGCGGGAGTT TTTAGGGTAG ATGACAAACA AAGAAATATG
AACATAAGAA CAGGATTTAG CAAAGATGGA TTAGATTGGA CAATAAATAA TCATCCCATA
GAGTTCATAA AAGAGTCAGA AGAAATCAAA AGCGACTATA AATACGATCC TAGAGTGGTA
TATATTGAAG ATAGATATTG GATAACCTGG TGTAATGGTT ACCACGGTCC AACTATTGGA
GTGGGATATA CCTTTGACTT TGAAAAATTT TACCAAATAG AAAATGCATT CCTACCTTAC
AATAGAAACG GCGTATTATT TCCTAGAAAA ATAAATGGAA AGTATGCAAT GCTTAGTAGA
CCTTCTGACA CTGGACACAC ACCATTTGGA GATATATTTT ACAGCGAAAG TCCAGATATG
ATACACTGGG GAAAACACAG ATATGTTATG GGAGCAGGAT ACACTCCATG GCAATCTTTG
AAAATAGGAC CAGGTCCAGC TCCTATTGAA ACAAAAGAAG GTTGGCTCTT GTTTTATCAT
GGTGTACTAC TTTCATGTAA CGGTTATGTA TATAGCTTTG GTGCTGCTCT CCTTGATCTT
GAAAAACCAT GGAAGGTTAT TAAACGCTCA AAATCTTATC TTCTATCTCC ACAGGAAATT
TACGAACAAG TTGGAGATGT ACCAAATGTG GTCTTTCCCG TATCGGCAAT TACCGAAAAT
AACAACGTAG TTATATATTA TGGTGCCGCT GATACGGTAA CTGCAATTGC TTTTGGATAT
ATTAGTGAAA TATTAGATTG GTTAAAATAC GAAAACTAG
|
|---|
| Protein sequence | MIPWEERPNS STEILWRYSK NPVIKRNAAK NSNSIFNSAI VKHKDGFAGV FRVDDKQRNM
NIRTGFSKDG LDWTINNHPI EFIKESEEIK SDYKYDPRVV YIEDRYWITW CNGYHGPTIG
VGYTFDFEKF YQIENAFLPY NRNGVLFPRK INGKYAMLSR PSDTGHTPFG DIFYSESPDM
IHWGKHRYVM GAGYTPWQSL KIGPGPAPIE TKEGWLLFYH GVLLSCNGYV YSFGAALLDL
EKPWKVIKRS KSYLLSPQEI YEQVGDVPNV VFPVSAITEN NNVVIYYGAA DTVTAIAFGY
ISEILDWLKY EN
|
|---|
| |