| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0889 |
|---|
| Symbol | |
|---|
| ID | 5298319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 922929 |
|---|
| End bp | 926390 |
|---|
| Gene Length | 3462 bp |
|---|
| Protein Length | 1153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 640769168 |
|---|
| Product | chromosome segregation protein SMC |
|---|
| Protein accession | YP_001306135 |
|---|
| Protein GI | 150020781 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG1196] Chromosome segregation ATPases |
|---|
| TIGRFAM ID | [TIGR02168] chromosome segregation protein SMC, common bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0518869 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGCATTT TACTTAAGGG AATCTTTTTG AAAGGTTTCA AATCTTTTGG AAAACCAACA
AAAATTCCAA TATCCCCAAA TATAACGGCA ATTGTGGGAC CCAATGGTTC CGGAAAATCT
AACATTGTAG AGGCCATTCA ATGGGTTTTG GGAGAACATT CCCTAAAAAA CCTACGTGCA
TCTGAAAAAT TTGACATTAT ATTCAAAGGT AGTAAAAAGC TTTCATCTTC ACGGAGCGCT
TTTGTTGAAT TAAGTTTTAA TTTCAATGGA GAAGAATACA AAATTGCTAG AGAATTAACC
TCCTCAGGAG AAAATACATA TTACATAAAC GGTGAAAAAG CACGCCTTAA AGACATAACC
GCTTTATTTG GTGCAAATGG TATGGTATCA ATAATAGGAC AAGGAAAAAT AGACAAGATA
GCAATGTCAA CTCCAGATGA GTTAAAGAAA ATATTTGAAG ATGCTGCAGG TACATCTATA
TACATCGAAA GAAAAAAGGA AGCTCTCTCA AAACTTGCCG GTACTGAAAC AAATATTGAA
AGAATTAAGG ATGTTATTTA CGAAATAGAA AAAAACAAAA AAAGTCTATA CATCAAAGTT
AAAAAAGCGG AAAAATTCAA AGAGTACTCT CAAAAATTAG AAGAGATAAA GATAAGGTAT
TTTGGTGGAA TATATTATTT TGAAAAGAAA AAACTAGAAT CACTTGACAA AAAACACAAA
AATCTAAAAG CCCTTCTTAA AACCAAACTA AAATCTCTTG CCGAAACAGA AAGTAGATGG
AATATTTTAA GGGAAGAATT TAACAAAATA AACAAAAAGA TGGAAAATTT TACCTCCCTA
CTTGAAACTC AAAAAATACG TCAAAATCAG CTTCTTGAAC TTAAAAACTC CTATACAGAT
AGATTAAATG ATTTAAAAAA TATATACGTT GAAAAAATGA CAAAAATTGA TTCTCTAAAA
GATGAGCTAA AAAGAATTAA AGACCGTGAA CAGGAAATTT CATTAATCTT CGACTCCTTA
ATACTAGAAA TAAATAAACA AGAAACTGAG TTATCAAAAA TTGAAGAAGA AAGAAATACA
TTACTTTCGA AATACTCAAC AAAAGAAATG GAATACTTAA AGAAAAAAAA CGAATATGAT
GAAATTGAAA AAAATATACA TAAATTGGAA AACGAAAAAA AATCACTTTA TAATTCCGTA
AATGACCTAA AAGAACGAAT CTCAATGATA AAAGAACAAC TAGAGATAAA GTATGAAAGA
AAAAAAGATC TAGATAAAGA AATAAAGGAA TTATCCGAAA ATGCAGAAAA ATATGACCAA
AAAACAAAAA GCCTTCTTGA AGAAATTAAA ACAATTAAAG AAAAAACTGA TTCCTTAAAT
CAAGAAAGAG AATATTTAAA AGAAAACTTA GAAAAACTAA TTCACAGAAA AAAAGAAATA
CAATCTGAAA TATCGATAAT CAAAAAAAAT ATCTCAGAAT ACCAAGGTTT TTCTTTTGCA
ATAAAGAAAA TATTTGAAAA CAAAGAAAAA TTTCCGGGAA TAATAGATGT AGTTGCAAAT
ATAATTGATG TAGACAAAAA GTATGTAGAA GCGATCGAAG CATTATTAGG TGGAAGAATG
CAACATATAG TTGTGGAAAA TTCAGAAGTT GCAAAAAAAA TATTACAATT TGCAAAAGAA
CAAAAAATAG GTAGAATAAC AATTATTCCA CTTGATTTAA TACGTATATT TTCGAAAAAT
TCCATTCTTC CAAAAAATGC TATTTTTGCA AAGAATATAG TAACCATCAA AGTAGATGAA
AAAGAAAAAC TATTAAATTT TCTTTTTGGT AATGACATAA TAGTTGAAAA TATAGATTTA
GCAGTTGAAA TAAAGAAAAA ATACGACTTT AGGATTGCAA CTTTAGACGG AGAATTAATT
AGCAATTCAG GAACAATAAC AGGTGGAAAA TCTGAACATA TATCACCACT ATCGAGAAAA
AAACAACTTG AAAAATTGAA AGAAGAGTTG GAAAATATTT TCCAACTTGA AGAAAAAACT
AGTGCAAAAA TTTCTCAATT AAAAGATGAA ATAAACGAAC TTAGAAAATA CAATGAAGTA
ATTAATTCTG AGTTTTTAGA AATAAACAGT AAAAGTTCAT CTGCAAAAAG GATGCTTCAA
GAACTTGTTA AATCTCAAAA TGAACTAAAT AAAGAAATTA CAAACTTAGA AAAAATACTA
AGTAATACTA CCTTAAGACT AAGCGGAGTG GAAGAAAGAA TAAATATAAT AGATGATGAA
ATAAAAAACT CAACCTATCT TTTAAAAACA TTAAAATTAA CATTAGAAAA CACAAATAAG
GAAATGTACG AAGATAAAGA AAAAATAGAA AAGATAAATG AATCGTATCT AGAGCTTCAA
TCTAACTTAA GAGGTTTAAA CGAAAGAAAA ATACAATACG AAGGAGAATT GAAAAGACTA
TCAAATAGAA AAGATGAAAT AGAAATTGAA ATTTCTACAA TTACAAATGA AACAAAATAC
GAAAAGGAAA AAATAGAAGA ACTTGAAAAC TCAATAGAAG AAATAGAAAA AGAACTAAAA
ACGCTAAAAG AAGAAACAGA AGCACTTTTC AAAAATATGA ACGAAGATAA AGACGGAAAA
AATAACAAGC TAAAAGAACT TGAAACACTA GAGAGTGAAA TGGAAAAGCT AAGAACAGAA
ACAGAAGAAT TAAGAGAAGA AATCCATTCA ACAGAACTAG AATTACAAAA AGTAAGACTA
AAAATAGAGA ACATAGACGA AAAATACAGG AAAGAAGTTA AACTTTCGAG TGAAGAAATT
GATATGTTAA AAAAAGAAAT GGAAACTATA GAGACAAAAC TAAAATACAT TGGACCAGTT
GATTTTGAAG CAGAAGAAGA ATACCAAGAA GTTTCCCAAA AATTAGAAAC TCTTGAAAAA
CAAAAAAAAG ATCTAGAAGA TGCAAAACAA AAAATAATAG AACTAATCGA AAAAACAGAT
GAAGAAGCAA CTCAAATATT CATGAACACA TTTAATATTA TTAAAAAAAC ATTTAAAAAT
TACATAAAAG AACTGTTTTT TGGTGGAAAA GGTGATATAA GGTTGCTTGA TAAAGAAAAC
ATCTTAGAAA GTGGTATTGA AATAATTATA ACCAAAGGAG ATGGAAGATC TCAAAAACTT
CAACTTTTAT CCGGCGGCGA AAAAGCGCTT GTGGGTCTTG CTCTTCTCAT GTCACTTCTT
CAAGCACAAC CAAGTGCTTT TTATGTACTT GATGAACCAG ATGCTCCATT AGATGAATTT
AACGCAGAAC GTTTTAAAAT GTTACTAAAA AATTCGAAAG CACAAATAAT TATCATTACT
CATAAAAAAA TTGTCATGGA GGCGGCGGAT ATAATGGTTG GTATTACAAA AACAGATGAT
ATCTCAACAA TAGTACCAGT AAGAATGGAG GAGGTAGTAT GA
|
|---|
| Protein sequence | MSILLKGIFL KGFKSFGKPT KIPISPNITA IVGPNGSGKS NIVEAIQWVL GEHSLKNLRA
SEKFDIIFKG SKKLSSSRSA FVELSFNFNG EEYKIARELT SSGENTYYIN GEKARLKDIT
ALFGANGMVS IIGQGKIDKI AMSTPDELKK IFEDAAGTSI YIERKKEALS KLAGTETNIE
RIKDVIYEIE KNKKSLYIKV KKAEKFKEYS QKLEEIKIRY FGGIYYFEKK KLESLDKKHK
NLKALLKTKL KSLAETESRW NILREEFNKI NKKMENFTSL LETQKIRQNQ LLELKNSYTD
RLNDLKNIYV EKMTKIDSLK DELKRIKDRE QEISLIFDSL ILEINKQETE LSKIEEERNT
LLSKYSTKEM EYLKKKNEYD EIEKNIHKLE NEKKSLYNSV NDLKERISMI KEQLEIKYER
KKDLDKEIKE LSENAEKYDQ KTKSLLEEIK TIKEKTDSLN QEREYLKENL EKLIHRKKEI
QSEISIIKKN ISEYQGFSFA IKKIFENKEK FPGIIDVVAN IIDVDKKYVE AIEALLGGRM
QHIVVENSEV AKKILQFAKE QKIGRITIIP LDLIRIFSKN SILPKNAIFA KNIVTIKVDE
KEKLLNFLFG NDIIVENIDL AVEIKKKYDF RIATLDGELI SNSGTITGGK SEHISPLSRK
KQLEKLKEEL ENIFQLEEKT SAKISQLKDE INELRKYNEV INSEFLEINS KSSSAKRMLQ
ELVKSQNELN KEITNLEKIL SNTTLRLSGV EERINIIDDE IKNSTYLLKT LKLTLENTNK
EMYEDKEKIE KINESYLELQ SNLRGLNERK IQYEGELKRL SNRKDEIEIE ISTITNETKY
EKEKIEELEN SIEEIEKELK TLKEETEALF KNMNEDKDGK NNKLKELETL ESEMEKLRTE
TEELREEIHS TELELQKVRL KIENIDEKYR KEVKLSSEEI DMLKKEMETI ETKLKYIGPV
DFEAEEEYQE VSQKLETLEK QKKDLEDAKQ KIIELIEKTD EEATQIFMNT FNIIKKTFKN
YIKELFFGGK GDIRLLDKEN ILESGIEIII TKGDGRSQKL QLLSGGEKAL VGLALLMSLL
QAQPSAFYVL DEPDAPLDEF NAERFKMLLK NSKAQIIIIT HKKIVMEAAD IMVGITKTDD
ISTIVPVRME EVV
|
|---|
| |