Gene Tmel_0687 details

Gene Information

• Locus tag: Tmel_0687
• ID: 5297207
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermosipho melanesiensis BI429
• Kingdom: Bacteria
• Replicon accession: NC_009616
• Strand: +
• Start bp: 726630
• End bp: 727046
• Gene Length: 417 bp
• Protein Length: 138 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 640768967
• Product: hypothetical protein
• Protein accession: YP_001305936
• Protein GI: 150020582
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.753224
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGTTGA AAAAAGGTTT TACTTTGGTT GAACTTTTGA TAGTTTTGGC AGTTATTGCT 
GCATTGTTAT CTGTTGCAAC ACCTCTTGCA ATTAACGCAG TTAAAAGCGC AAAAGCAAGT 
CAAGTAGCAC AGAACTTCAG ATCAATAAAA TCCGCTATTG AAAATTATTT CAACACAGAA 
ACTCCTAGCG ATCCCACAAA TATTCAAAAC AGCGATTTGG AAAACGGTTA TATAAACAGT 
TTTCCAGCAA ACTTTTCATT TACAATTTCA GATTCCGGAA ATGGTGTTTA TACGGTAACC 
ATCACGTACA CAGGAAAAGA CGTAGCACTT GATAAGGTTC AAAAAGCAGG ATTAAAAGAA 
GTAGCTCAAA ACGGAGACAA TTTAGAGCTT ACATTCGATC TCCAAAAATG GTGGTAA 

 

Protein sequence

MKLKKGFTLV ELLIVLAVIA ALLSVATPLA INAVKSAKAS QVAQNFRSIK SAIENYFNTE 
TPSDPTNIQN SDLENGYINS FPANFSFTIS DSGNGVYTVT ITYTGKDVAL DKVQKAGLKE 
VAQNGDNLEL TFDLQKWW