| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0548 |
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| Symbol | |
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| ID | 5296727 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | - |
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| Start bp | 582593 |
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| End bp | 584782 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 640768809 |
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| Product | glycogen debranching enzyme GlgX |
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| Protein accession | YP_001305800 |
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| Protein GI | 150020446 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGATT ATCCATTACA ATATGATAAT CCTGATTCAA CTGTTAAATT AAAAACCAAA
AGAGGATATC CAAGGCTTGG TGCCACACCA GATGATACTG GTGTAAATTT TGCGTTATTC
TCAAGGCATG CCGAAAGGGT AATTTTAGAA TTGTATCAAA ACTATTACGA TGAAAAACCA
TCTCATAGTT TTGAGTTAGA CCCTATCTTG AATAAGACGG GAGATATTTG GCATATATAC
GTTTATGGTG TAAAACATGG TCAATACTAT GGTTGGCGGG TGGATGGTCC CTACAATCCA
GAAGAGGGGA AAAGGTTTAA TCTTAATAAG TTGTTAGTTG ATCCGTATGC CAAGGCAATT
TCAAGTTCCT TTGATTGGGA TTCATCATCT GTATATGGAT ATGATAAAAA TTCTCCTTTA
AAAGATTTGT CATTTTCTAC AGAGGATTCT GCAAAAAGTC CCACAAAATC AATAGTTATA
GATGATTCAA AATATGATTG GGGTAATGAC AAACAATTAC ATATTCCATG GGAAGATACT
GTTATATACG AAATGCATGT AAGGTTATTT ACCATAAGCC CTACTTCAAA TGTAAAATTC
CGTGGAACGT TTCTGGGAAT AATTGAGAAG CTTGATCATT TAAAAGAATT GGGAGTTACG
ACGATTGAAT TAATGCCAGT TTTTGAATTT AATGTGAATT CAATTGACAG AATTAATCCC
ATAACTGGTA AAAAATTAAA AGATGTTTGG GGTTACAATC CGTTGGGTTT TTTTGCGGTG
ACTGGTAATT ACTCTGTTGG TCTTAAACTT GGTGAACAAG TATTTTTATT TAAGGATTTT
GTAAAAGAAC TCCATAAAAA TGGTTTTGAG GTTATACTTG ATGTTGTTTA TAACCATACA
GGTGAAGGTA ATGAATTAGG TCCCACTTTA AACTTTAGGG GAATAGATAA TGAAATATAT
TACATGCTTA ACCCAAAGAA TAAAAGATAT TATTTAAATT ATTCGGGGTG TGGAAATACA
CTAAACTGTA ATCATCCTGT TGTAAAGCAG CTTATAATAG ATAGTCTTAG GTATTGGGTT
ACTGAAATGC ATGTTGATGG TTTTAGATTT GATCTTGCTG CTGTGTTGGG TAGAACCCCT
GATGGAAGGT GGATAGGTGA TTTTTCACTT CTTAAGGATA TTTCTGAAGA TCCCATATTA
CATAATTTAA AACTTATTGC AGAAGGTTGG GATGCAGCAG GAGGGTATTT TTTAGGTGAA
TTTCCACAGG GTTGGGCGGA ATGGAACGGA AAATATAGAG ACATAGTAAG AAAGTTTGTA
AGAGGAGATG AAGGAGTAAT AATAGAACTT GCAAAAAGGA TAACAGGTAG TGAGGATTTG
TATGGTAATA GAAATCCCCA AGCAAGTATA AATTTCATTA CTTGTCATGA TGGATTTACT
ATGAGAGATC TTGTTAGTTA TAATGAAAAG CATAATGAGG AAAATGGTGA GGATAATAGA
GATGGTACCA ATGAAAATTT TAGTTACAAT CACGGCGTTG AAGGAGAAAC TGACGAACCA
AAAATAATAA AAATTAGGAA ACAACAAGTA AAAAACTTTA TTACTATTCT TATGATATCG
CACGGTACCC CTATGATTTT AATGGGTGAT GAAATCTACA GAACACAATA TGGCAATAAC
AATGCATATT GTCAAGATAA TGAAAAGACA TGGCTTGATT GGACGTTAAA GGAAAAGCAT
TATGACATTT TTAGATTTTT TAAAAAAATG ATTGAATTTA GAAAAAAACA TCACGCATTG
AGAAGAAGAC ATTTTTTTAC CGGTAAAGAT TTGACAGGAG ATGGAATAGC AGATATTAGT
TGGCATGGTA TTATGCCATT TGAACCAGAT TGGTCATATA ATTCTCACTC TATTGCTTTT
ATGATAAGCG GAAGTGATTT TTTATGTGAA AATGCAAAAG AAGATAATGA TATATTTGTG
ATTTTGAACC AATGGATAGA ACCATTACAA TTTACCTTGC CAATTCTTCA CAATAAAACT
TGGTACAGGG TAGTAGATAC TTCAAAGGAT TCACCTAACG ATTTTTTAGA TGTGCCAGAA
CAAGTTGGTT TTAATTATAT AGCCCAACCA AAAAGTTCTG TTGTTCTAAT TAGTCAAAAA
AGTTACCAAG GAAGCAGTTT TCCCGTATAA
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| Protein sequence | MADYPLQYDN PDSTVKLKTK RGYPRLGATP DDTGVNFALF SRHAERVILE LYQNYYDEKP
SHSFELDPIL NKTGDIWHIY VYGVKHGQYY GWRVDGPYNP EEGKRFNLNK LLVDPYAKAI
SSSFDWDSSS VYGYDKNSPL KDLSFSTEDS AKSPTKSIVI DDSKYDWGND KQLHIPWEDT
VIYEMHVRLF TISPTSNVKF RGTFLGIIEK LDHLKELGVT TIELMPVFEF NVNSIDRINP
ITGKKLKDVW GYNPLGFFAV TGNYSVGLKL GEQVFLFKDF VKELHKNGFE VILDVVYNHT
GEGNELGPTL NFRGIDNEIY YMLNPKNKRY YLNYSGCGNT LNCNHPVVKQ LIIDSLRYWV
TEMHVDGFRF DLAAVLGRTP DGRWIGDFSL LKDISEDPIL HNLKLIAEGW DAAGGYFLGE
FPQGWAEWNG KYRDIVRKFV RGDEGVIIEL AKRITGSEDL YGNRNPQASI NFITCHDGFT
MRDLVSYNEK HNEENGEDNR DGTNENFSYN HGVEGETDEP KIIKIRKQQV KNFITILMIS
HGTPMILMGD EIYRTQYGNN NAYCQDNEKT WLDWTLKEKH YDIFRFFKKM IEFRKKHHAL
RRRHFFTGKD LTGDGIADIS WHGIMPFEPD WSYNSHSIAF MISGSDFLCE NAKEDNDIFV
ILNQWIEPLQ FTLPILHNKT WYRVVDTSKD SPNDFLDVPE QVGFNYIAQP KSSVVLISQK
SYQGSSFPV
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