| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0407 |
|---|
| Symbol | |
|---|
| ID | 5297440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 428221 |
|---|
| End bp | 429147 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 640768670 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001305661 |
|---|
| Protein GI | 150020307 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1511] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAACT TGTTGTTAAT GTTGCCTATG GGAAAATTAA CTGTTTTCTT TGCTAAGGTT
CAAATAGAGA CTTTCGGTAA AGAGTTAAGT AGAGATAAAG GGGGGAAAGA TTTGATAGAG
TTCTTTCTAA AGTTATTTAT CTTTATAAAG CGAGATATAA TTATATGGTT TTCATACCGA
ACACAATTTA TATTGAGACT TTTAAGTGGA TTTGTAGGAA TAATACAATT TGGTCTCATA
GGTAAATTTA TAGCAGGTGG GAATTATTTT CCATTGATAG AAAAATATGG AGGAGATATC
CTTGCATACT TCATTACAGG GTCTGTATTT ATGTCATATA CAAATCTTGC TTTATCTACC
TTCAAAACTT CAATTCAAAG AGAACAAAAC ATGGGCACAC TTGAATATTT ATTACTCTCA
AGAACATCAT TCTGGCAACT GTTTATTTTT AATTTTTTAA GTGGTTTTTT GTTTACAACT
TTAAATATTT TATTTATATT TTTTGCTCTT GTTTTTCTTT TTTCGGTTGA AGTAAAGGTA
AATGTCTTTT CAACTTTTTT AGTGTTAATA GTGGTGACAT TTTCACTTTC AGGGATAGGA
CTCCTTTCTG CTGCAATGAT ACTAGTGACA AAGAGAGGAG ATCCAGTTGG ATGGATATAT
TTTACTCTTT CTGGACTTTT TTCAGGAATA TATTATCCAA TAGAAATCTT TCCAACTTTT
CTAAAAAAAA TATCATACTT TCTTCCAACA ACGTATGGTA TGGATCTTTT AAGAAATACT
TTGCTAAAAG GGTACAATAT TGGTGAAATA AAAAAGGGCT TGCTAATCAT GCTGACTATG
GGATTAATTA TTTTCCCATT AGGAGTATGG CTATTTAATA CAAATTTTAA TAAAGCAAGA
AAAGAAGGTA CACTTACTTG GTATTAG
|
|---|
| Protein sequence | MINLLLMLPM GKLTVFFAKV QIETFGKELS RDKGGKDLIE FFLKLFIFIK RDIIIWFSYR
TQFILRLLSG FVGIIQFGLI GKFIAGGNYF PLIEKYGGDI LAYFITGSVF MSYTNLALST
FKTSIQREQN MGTLEYLLLS RTSFWQLFIF NFLSGFLFTT LNILFIFFAL VFLFSVEVKV
NVFSTFLVLI VVTFSLSGIG LLSAAMILVT KRGDPVGWIY FTLSGLFSGI YYPIEIFPTF
LKKISYFLPT TYGMDLLRNT LLKGYNIGEI KKGLLIMLTM GLIIFPLGVW LFNTNFNKAR
KEGTLTWY
|
|---|
| |