Gene Tmel_0274 details

Gene Information

• Locus tag: Tmel_0274
• ID: 5297350
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermosipho melanesiensis BI429
• Kingdom: Bacteria
• Replicon accession: NC_009616
• Strand: +
• Start bp: 282388
• End bp: 284376
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 640768531
• Product: RNA-binding S1 domain-containing protein
• Protein accession: YP_001305531
• Protein GI: 150020177
• COG category: [K] Transcription
• COG ID: [COG2183] Transcriptional accessory protein

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACATA TCATTGCTAA AGAATTGGAA ATAAAAAGCT GGCAAGTAAA AAATGCAATA 
GAATTGTTAA AAGAAAACAC AATACATTTT GTAAGTCGAT ATAGAAAAGA TCAAACTGGT 
GGTTTAAATG AAATACAACT AAGAAAAATT GAAAAAAGAT ATAAGTACTT ACGAAATGTT 
GAGCAACTTA AGATAAAAAT TCTAAAAATT CTGGAAAAAG ATGGTGTTTT AACACCTCAA 
CTAAAGAAAA AAATAGAACA TACATTTACT TTAAATGAAC TTGAAGACAT TTATTTGCCT 
TTTAAAAAAA GAAAAAAGAC TAAAGCAGAT ATTGCAATAG AAAATGGTCT TTTACCACTT 
GCTGAAAAGA GCACCAAAGG CACTATTAAT TTGGAATTAG TTAACGAAAA AGAAAAAATT 
ATTGAAGGAA TAACGGATAT TTTAGCTCAA AAATTTTCAC ATAACGATAT TGTTAGAAAA 
AAATTAGAGA TATTTTTAAT CAAATACGGG TATGTGAAAT GCAAAAAAAA GGTGAAAAAG 
AAAACAAAAT ATGATATGTA TGACAATTTC ACAAAAAAGC TAAGTTTATT ACATCCACAC 
AACATATTAT CAATAAACCG AGGAGAAAAA GAAGGAGCAC TAAAAGTAAA GCTTTATTTA 
CCAGAAAAAT TTAAAGAAGA TATTTTCAAT CTAATGAATT GGAATAAAAA TGAAATAGTT 
GAAAAAGGGT TGAAAAAGGG TTGGAAAATT TTATTTTCTT CTATTGAAAA GAGGGTAAGA 
AAGATTTTAA CAGAAAAAGC AGAAGAAAGA TCCATAAAGG TTTTTTCAAA AAATCTAAAA 
CAATTACTAT TAACTCCTCC ACTAAAAAAT ACCAGAATAC TTGCTATAGA TCCCGGAAAC 
AAAACAGGAT GTAAAATAGT AGCATTGGAT GAACTGGGTA ATCCACTTGA ACATGCTGTT 
ATCTATCCAA CTGCACCTTA TTTTGACACA AAAAATTCTG AAAAAAAGAT ATTAAAAATG 
CTCCAAAACC ACAAGCTAAA ATTAATAGTA ATAGGAAATG GTACTGCATC TAGGGAAACA 
CAACAATTTA TAGCAAAAAC GATTAAAAAA TACAATTTAA AAACAAAGTA TATATTTTCA 
AATGAAGCAG GTGCATCTGT ATATTCAGTT TCAGATATTG CCATTGAGGA ATTTCCAACA 
CTTGATCCAA CAATTAGAAG TGCAATCAGT ATTGGCAGAA GAGTCCAAGA TCCTTTGGCA 
GAATTAGTTA AGATAGATCC TAAGTCGTTA GGTATGGGGC AATACCAACA CGATATAAAC 
CAAAAAAAAT TAGCCGAAGA GTTAAAAAAC GCAGTAACAG ATATTGTTAA CCAACTTGGA 
ATTGATCTAA ACAGTGCTTC TTCAAAACTC TTAGAACATG TCGCAGGAAT CACACCTTCT 
CTTGCAAAAA AAATTGTAAA CTTTAGAAAA AAAATAGGGA AATTCACAGA AAGGAAACAA 
TTACTTGAAA TAGAAGGTTT GGGACAAAAG ACGTATACAC AATGTGCTGG TTTTCTAAGG 
ATAAAAAATG GAAAAAATCC TTTAGAATCT ACGGCAATTC ACCCAGAACA TTACAAAATA 
GCAAATGAAA TTCTTAAAAA CAATATATAT GATTTAGACT ATCTATCAAA AAAATTCAAT 
GTGGGAATTT TAACATTGAC TGATATTATA AACGAATTAA AAAGTATGGG AAAAGAAGAT 
AATTTACCTA CTCCCATCTT CTACAACGAA ATAACTGATT TTAAAGAATT AAAAATTGGC 
ATGAAATTAA AAGGCAAGGT TATTAATATA ACAGACTTTG GTATCTTTGT AGACATAGGT 
TTAAAAGAAT CTGGATTTAT ACACAAAAAG TTAATAGATA AAGAAATTAA AATAAATGAT 
ATAATAGACG TGGAAGTAAT CGATATAGAC AATGATTTAA GATATATAAA ATTAAAATCC 
AGGAGGTGA 

 

Protein sequence

MEHIIAKELE IKSWQVKNAI ELLKENTIHF VSRYRKDQTG GLNEIQLRKI EKRYKYLRNV 
EQLKIKILKI LEKDGVLTPQ LKKKIEHTFT LNELEDIYLP FKKRKKTKAD IAIENGLLPL 
AEKSTKGTIN LELVNEKEKI IEGITDILAQ KFSHNDIVRK KLEIFLIKYG YVKCKKKVKK 
KTKYDMYDNF TKKLSLLHPH NILSINRGEK EGALKVKLYL PEKFKEDIFN LMNWNKNEIV 
EKGLKKGWKI LFSSIEKRVR KILTEKAEER SIKVFSKNLK QLLLTPPLKN TRILAIDPGN 
KTGCKIVALD ELGNPLEHAV IYPTAPYFDT KNSEKKILKM LQNHKLKLIV IGNGTASRET 
QQFIAKTIKK YNLKTKYIFS NEAGASVYSV SDIAIEEFPT LDPTIRSAIS IGRRVQDPLA 
ELVKIDPKSL GMGQYQHDIN QKKLAEELKN AVTDIVNQLG IDLNSASSKL LEHVAGITPS 
LAKKIVNFRK KIGKFTERKQ LLEIEGLGQK TYTQCAGFLR IKNGKNPLES TAIHPEHYKI 
ANEILKNNIY DLDYLSKKFN VGILTLTDII NELKSMGKED NLPTPIFYNE ITDFKELKIG 
MKLKGKVINI TDFGIFVDIG LKESGFIHKK LIDKEIKIND IIDVEVIDID NDLRYIKLKS 
RR