| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0117 |
|---|
| Symbol | |
|---|
| ID | 5298379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 119761 |
|---|
| End bp | 120966 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 640768369 |
|---|
| Product | peptidase |
|---|
| Protein accession | YP_001305379 |
|---|
| Protein GI | 150020025 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR03320] M20/DapE family protein YgeY
[TIGR03526] putative selenium metabolism hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCACGAAG CTTTAAAACT TGCTTATAAA TACAAAGACG ACATTGTACA ATTTATGAGT
AAATTAATAA AAACTAAAAG TTATTCTGGA AGTGAAGCTG AAGTAATTAA AGTTATAAAT
GATGAAATGG AAAAAGTGGG ATTTAACGAA ATAACAGTAG ACGGTTTAGG AAATATTATC
GGAAAAATAG GAAATGGAAA GACAACGATT GCAATGGATG CACATATTGA TACTGTAGAT
ATAGGAAATG AAAACCTCTG GGATTTTGAA CCTTTTTCCG GGCATTTTGA TGAAAAATAT
GTATATGGTA GGGGAGCATC AGATCAAAAA GCAGGAATGT GTTCTATGGT TTATGGAATC
AAAATTTTAA AAGAACTAAA TTTATTAGAC AACTTCACAT TATATGTAAC AGGCACCGTT
ATGGAGGAAG ATTGTGATGG ATTATGTTGG CGATATATTA TCGAAGAAGA CAAAATTAAA
CCAGATTTCG TTCTAATAAC TGAACCAACT TCTTTAAAGA TAAACAGAGG ACATAGGGGA
AGAATAGAAT TTAAAATAAG AACAAATGGT ATATCTGCAC ACGCAAGTGC TCCAGAAAGA
GGCGTCAATG CAATATATAA AATGGCAAAG ATAATTACAG AAATAGAAAA ATTAAATAAT
AAGCTTGAGA GTGATTCGGT TTTGGGAAAA GGTACAATAG TAGTTTCTCA AATTTTCTCC
AAATCCCCTT CACAAAATGC TGTTCCCGAC CAATGTGAAA TTCATATTGA CAGGAGAATA
AACGAAAAAG AAACTAAAAA AATTGTCTTT GAAGAAATAA CTGATATATT TGAAAAGGCG
GGAATAAATG ACGCAGAAAT AATAGAATTA TATTACAAAA AACCTTCATA TACTGGAAAA
GTTTATCTCA CTGAAAAATA CTTTCCCGCT TGGATTTTCC CAGAAGATAG TGAAATTGTA
AAAAGTGCTG TAAAAAACTA TGAAACCCTA TTCGAAACAA CTCCTACAAT AGACAAATGG
ATTTTTTCAA CCAATGGCAC TGTAACCGCA GGGGTATACA ACATTCCAAC AGTGGGTTTC
GGCCCAGGTG AAGAAAAATA TGCCCACGCA CCAAATGAAA GGGTTAAAAT TGAGCATTTA
TTAAAAGCTG CAGCATTTTA CGCAACATTT CCAAAAACAT TAGTAAAAAT GTTAAAGGGG
GAATAA
|
|---|
| Protein sequence | MHEALKLAYK YKDDIVQFMS KLIKTKSYSG SEAEVIKVIN DEMEKVGFNE ITVDGLGNII
GKIGNGKTTI AMDAHIDTVD IGNENLWDFE PFSGHFDEKY VYGRGASDQK AGMCSMVYGI
KILKELNLLD NFTLYVTGTV MEEDCDGLCW RYIIEEDKIK PDFVLITEPT SLKINRGHRG
RIEFKIRTNG ISAHASAPER GVNAIYKMAK IITEIEKLNN KLESDSVLGK GTIVVSQIFS
KSPSQNAVPD QCEIHIDRRI NEKETKKIVF EEITDIFEKA GINDAEIIEL YYKKPSYTGK
VYLTEKYFPA WIFPEDSEIV KSAVKNYETL FETTPTIDKW IFSTNGTVTA GVYNIPTVGF
GPGEEKYAHA PNERVKIEHL LKAAAFYATF PKTLVKMLKG E
|
|---|
| |