Gene Tmel_0038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_0038 
Symbol 
ID5297052 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand
Start bp41784 
End bp42665 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content31% 
IMG OID640768288 
Productperiplasmic binding protein 
Protein accessionYP_001305302 
Protein GI150019948 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000608499 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAT TTTTAACCGT TGTTATTACA ATTTTGAGTA TTTTGGCCTT TTCTATTTCC 
ATTGTCGATG ACGCCGGAAG ATTGGTAACT TTTGATAAAG TACCAAAACG TATAGTATCT
GCTGCGCCAA GTTCTACAAA ATTTTTATTG AAACTTGGTT TGGATGAAAA AATTGTAGGA
GTTACCGATT GGGATGTATT TAACGCGGAA AAAATTGGTA ACATGGTACC GTTAAATATC
GAAAAAATAC TTTCGTTAAA TCCAGATGTA GTAATAACGT TTGGAGGATT CCAATTACCA
GAAGTTGAAA AATTGGAGAA ATTTGGTATC AAAGCTTTTG TTATCAACCC TGTTACCTTA
AATGACATAG CAAGAGATAT AATGTTACTT GGAAATATTT TCAAAAAAAC TGAATTAGCT
AAAAAAGTAA AAGATGAAAT TTTATCAAAA ATGAAAGATT ACGGCACAAA GACAGCAAAA
ATTCCACTTT CAAAAAGACC AAAAGTATTT TTCACCATAA CAATCCCAAA TGAGGAAACA
AAAGACCTAT GGACTGCCGG AACGGGATCG TATATAAATG AATTGATAAC AATCGCAGGA
GGAGTTAATA TCTGTGCCCC ATATACGGGA AACAACGGAT GGTTTTCCGT TAATTGGGAA
TTTCTAACAA TTAACGACCC AGATGTAATA ATAGTTTCTG GATATGGTAA TCCAGAAAAA
ATAAAAGAAA ATATAAAATC TAACAAACTA TTTTCTTCTT TAAAAGCTGT TAAAAATGAC
AGAATTCTTA TTGTCAATGG AAACGATATT AGCTCTATCT CCCCTGATAT TATAAAATAT
CTGGATATTT TTTATAATTT TTTTTATGGA GGAAATAAAT GA
 
Protein sequence
MKKFLTVVIT ILSILAFSIS IVDDAGRLVT FDKVPKRIVS AAPSSTKFLL KLGLDEKIVG 
VTDWDVFNAE KIGNMVPLNI EKILSLNPDV VITFGGFQLP EVEKLEKFGI KAFVINPVTL
NDIARDIMLL GNIFKKTELA KKVKDEILSK MKDYGTKTAK IPLSKRPKVF FTITIPNEET
KDLWTAGTGS YINELITIAG GVNICAPYTG NNGWFSVNWE FLTINDPDVI IVSGYGNPEK
IKENIKSNKL FSSLKAVKND RILIVNGNDI SSISPDIIKY LDIFYNFFYG GNK