| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TBFG_12960 |
|---|
| Symbol | |
|---|
| ID | 5223646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium tuberculosis F11 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009565 |
|---|
| Strand | - |
|---|
| Start bp | 3302976 |
|---|
| End bp | 3307826 |
|---|
| Gene Length | 4851 bp |
|---|
| Protein Length | 1616 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640607726 |
|---|
| Product | polyketide synthase pks1 |
|---|
| Protein accession | YP_001288889 |
|---|
| Protein GI | 148824135 |
|---|
| COG category | [C] Energy production and conversion
[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases
[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3321] Polyketide synthase modules and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 67 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 202 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATTTCGG CGAGATCGGC TGAGGCGTTG ACGGCGCAGG CGGGTCGACT TATGGCCCAC
GTGCAGGCCA ACCCAGGGCT GGATCCGATC GATGTGGGGT GCTCGTTGGC CAGTCGCTCG
GTGTTTGAGC ACCGAGCGGT GGTGGTCGGC GCAAGCCGTG AGCAACTGAT TGCCGGGCTG
GCTGGGCTCG CGGCGGGCGA GCCGGGTGCC GGCGTGGCGG TCGGTCAGCC AGGGTCGGTG
GGCAAGACGG TGGTCGTGTT TCCTGGGCAG GGCGCGCAGC GCATCGGGAT GGGCCGCGAG
TTGTACGGCG AGTTGCCCGT GTTTGCGCAG GCATTCGATG CGGTGGCCGA CGAGTTGGAC
CGGCATCTGC GGTTGCCGCT GCGCGACGTT ATTTGGGGTG CCGATGCGGA TTTGCTTGAC
AGCACCGAAT TTGCTCAGCC CGCGTTGTTC GCGGTGGAGG TGGCATCGTT CGCGGTGTTG
CGGGATTGGG GTGTGCTTCC GGACTTCGTC ATGGGTCACT CCGTTGGAGA GCTGGCGGCG
GCGCACGCGG CCGGTGTGTT GACGTTGGCG GACGCGGCGA TGCTGGTGGT GGCGCGGGGC
CGGTTGATGC AGGCGCTGCC GGCAGGCGGT GCGATGGTGG CGGTGGCTGC CAGTGAGGAC
GAGGTGGAGC CGCTGCTGGG TGAGGGTGTG GGGATCGCTG CGATCAACGC GCCCGAATCG
GTGGTGATCT CCGGTGCGCA GGCCGCGGCA AATGCGATTG CGGATCGGTT CGCCGCGCAG
GGTCGGCGGG TGCACCAGTT GGCGGTCTCG CATGCGTTTC ATTCGCCGTT GATGGAGCCG
ATGCTCGAGG AGTTCGCGCG TGTCGCGGCC CGGGTGCAGG CACGCGAGCC CCAGCTTGGG
CTGGTGTCGA ACGTGACGGG CGAGTTGGCC GGCCCTGATT TCGGGTCGGC GCAGTACTGG
GTGGACCACG TTCGTCGGCC GGTGCGCTTC GCGGACAGTG CGCGTCATTT GCAGACCCTT
GGGGCGACCC ACTTCATCGA GGCCGGCCCG GGAAGTGGTT TGACTGGCTC GATCGAGCAG
TCCTTGGCCC CGGCTGAGGC GATGGTGGTG TCGATGCTGG GCAAAGACCG GCCCGAGCTG
GCCTCGGCGC TCGGTGCTGC CGGTCAGGTG TTCACCACCG GTGTGCCGGT GCAGTGGTCG
GCGGTGTTCG CCGGCTCGGG TGGACGGCGG GTGCAGCTGC CCACGTATGC GTTTCAGCGA
CGGCGGTTTT GGGAGACGCC GGGCGCGGAT GGGCCCGCCG ATGCGGCCGG GTTGGGTCTG
GGCGCGACCG AGCATGCCTT GTTGGGTGCG GTGGTCGAGC GGCCCGATTC TGACGAGGTG
GTGCTGACCG GCCGGTTGTC GCTTGCGGAT CAGCCGTGGC TGGCCGACCA CGTGGTGAAC
GGGGTGGTGC TGTTCCCCGG GGCGGGTTTT GTGGAGTTGG TGATCCGCGC CGGTGATGAG
GTCGGGTGCG CGCTCATCGA AGAGTTGGTG CTGGCCGCAC CGTTGGTGAT GCACCCGGGT
GTCGGGGTTC AGGTGCAGGT GGTCGTCGGG GCTGCCGATG AATCCGGGCA CCGTGCGGTG
TCGGTGTATT CCCGCGGTGA TCAATCCCAG GGTTGGTTGC TGAACGCCGA AGGCATGCTG
GGGGTGGCTG CCGCTGAGAC GCCGATGGAT TTGTCCGTGT GGCCGCCCGA GGGCGCGGAG
AGTGTGGATA TCTCGGACGG CTATGCGCAG TTGGCCGAGC GCGGTTATGC CTACGGCCCC
GCGTTTCAGG GTCTGGTGGC GATCTGGCGG CGGGGGTCGG AGCTGTTCGC CGAAGTTGTA
GCCCCCGGCG AGGCCGGCGT GGCCGTCGAC CGAATGGGGA TGCATCCGGC GGTGTTGGAC
GCGGTGCTGC ATGCCCTCGG GCTGGCCGTC GAGAAGACCC AGGCGAGCAC CGAGACGAGA
CTGCCGTTTT GCTGGCGTGG GGTGTCGCTG CATGCCGGCG GCGCTGGACG GGTGCGGGCC
CGCTTCGCGT CCGCGGGCGC GGATGCGATT TCCGTGGACG TCTGCGACGC CACTGGGCTG
CCGGTGTTGA CGGTGCGCTC GCTGGTTACT CGCCCGATAA CCGCAGAACA GCTGCGCGCC
GCCGTGACCG CGGCCGGCGG TGCGTCCGAT CAGGGGCCGC TGGAAGTGGT GTGGTCGCCG
ATCTCGGTGG TCAGCGGCGG CGCTAACGGG TCCGCCCCAC CTGCCCCGGT GTCTTGGGCG
GACTTTTGCG CCGGCAGTGA TGGTGACGCC AGTGTCGTGG TGTGGGAACT CGAGTCTGCC
GGTGGCCAAG CATCCTCGGT GGTGGGCTCG GTGTATGCGG CCACCCACAC CGCCCTGGAG
GTGTTGCAGT CCTGGCTCGG CGCGGATCGG GCGGCCACGT TGGTGGTGTT GACCCATGGT
GGCGTGGGGC TGGCTGGCGA GGACATCAGC GACCTGGCCG CCGCCGCGGT GTGGGGCATG
GCGCGTTCCG CGCAGGCCGA AAATCCCGGC CGGATCGTGT TGATCGACAC CGATGCGGCG
GTGGATGCCT CGGTGCTAGC CGGCGTCGGG GAACCCCAGC TGCTGGTGCG CGGCGGCACT
GTGCACGCCC CCCGGCTGTC CCCGGCCCCG GCGTTGCTAG CGTTACCGGC GGCAGAGTCG
GCGTGGCGAT TGGCCGCCGG TGGTGGCGGG ACCCTGGAGG ATTTGGTGAT CCAGCCCTGC
CCGGAGGTAC AGGCACCGCT ACAGGCGGGG CAGGTGCGCG TGGCGGTGGC GGCCGTCGGG
GTCAACTTCC GCGATGTGGT GGCCGCCCTA GGGATGTATC CCGGCCAGGC CCCACCGCTG
GGTGCCGAAG GCGCCGGGGT GGTGCTTGAG ACCGGTCCCG AAGTGACCGA TCTTGCCGTC
GGTGACGCCG TGATGGGATT CCTGGGCGGG GCCGGTCCGC TGGCGGTGGT GGATCAGCAA
CTGGTTACCC GGGTGCCGCA AGGCTGGTCG TTTGCTCAGG CAGCCGCTGT GCCGGTGGTG
TTCTTGACGG CCTGGTACGG GTTGGCCGAT TTAGCCGAGA TCAAGGCGGG CGAATCGGTG
CTGATCCATG CCGGTACCGG CGGTGTGGGC ATGGCGGCTG TGCAGCTGGC TCGCCAGTGG
GGCGTGGAGG TTTTCGTCAC CGCCAGCCGT GGCAAGTGGG ACACGCTGCG CGCCATGGGG
TTTGACGACG ACCATATCGG CGATTCCCGC ACATGCGAGT TCGAGGAGAA GTTCCTGGCG
GTCACCGAGG GCCGCGGGGT TGATGTGGTG CTCGACTCGC TGGCCGGTGA GTTCGTGGAT
GCGTCGCTGC GCTTACTGGT CCGCGGTGGG CGTTTCCTCG AGATGGGCAA GACGGATATC
CGCGATGCGC AGGAGATCGC CGCTAATTAT CCCGGCGTGC AGTATCGGGC GTTCGACCTG
TCGGAGGCCG GCCCGGCACG CATGCAGGAG ATGTTGGCCG AGGTGCGGGA GCTGTTCGAC
ACCCGGGAGC TGCACCGGCT ACCGGTCACC ACGTGGGATG TGCGCTGCGC CCCGGCGGCC
TTCCGGTTCA TGAGCCAGGC CCGCCATATC GGCAAGGTTG TCTTAACCAT GCCCTCGGCG
TTGGCCGACC GGCTTGCCGA CGGCACGGTG GTGATCACCG GTGCCACCGG GGCGGTTGGT
GGGGTGTTGG CCCGCCACCT GGTTGGCGCC TATGGGGTGC GTCATCTGGT GTTGGCCAGT
CGGCGGGGCG ATCGCGCGGA GGGAGCGGCC GAATTGGCCG CCGACTTGAC GGAGGCCGGC
GCCAAGGTGC AGGTGGTGGC CTGTGACGTG GCCGATCGCG CTGCGGTAGC GGGGTTGTTT
GCCCAGCTGT CGCGGGAGTA CCCGCCGGTG CGCGGGGTGA TTCATGCCGC CGGCGTGCTC
GATGACGCAG TGATCACCTC GTTGACACCG GACCGCATCG ATACGGTGTT GCGGGCCAAG
GTGGACGCGG CGTGGAACCT GCACCAGGCC ACCAGTGACC TGGATTTGTC GATGTTTGCG
CTGTGCTCAT CGATCGCGGC CACGGTCGGC TCGCCGGGGC AGGGCAACTA CTCGGCGGCA
AACGCGTTTC TGGACGGGTT GGCCGCTCAC CGGCAGGCCG CAGGGTTGGC CGGGATATCA
CTGGCGTGGG GTTTGTGGGA ACAGCCTGGC GGCATGACCG CGCATTTGAG CAGCCGAGAT
CTGGCCCGCA TGAGCCGCAG CGGGCTGGCT CCGATGAGCC CTGCCGAAGC GGTGGAATTG
TTTGACGCTG CGCTGGCCAT CGATCACCCT CTGGCGGTGG CCACGCTCTT GGACCGGGCT
GCACTAGACG CCCGGGCCCA GGCCGGTGCG TTGCCGGCGC TGTTCAGCGG GCTCGCGCGC
CGCCCACGCC GACGCCAAAT CGACGACACC GGTGACGCCA CCTCGTCGAA GTCGGCGCTG
GCTCAACGCC TACACGGGCT GGCCGCGGAC GAACAACTCG AGCTGCTAGT GGGGCTGGTG
TGTCTGCAGG CAGCGGCAGT GCTGGGTAGG CCCTCCGCCG AGGACGTCGA CCCCGACACC
GAATTCGGCG ACCTCGGTTT CGACTCATTA ACGGCTGTGG AGTTACGCAA CCGCCTCAAA
ACCGCCACCG GACTGACGCT GCCACCTACC GTGATTTTCG ATCATCCCAC TCCCACTGCG
GTCGCCGAGT ATGTCGCCCA GCAAATGTCT GGCAGCCGCC CAACGGAATC CGGTGATCCG
ACGTCGCAGG TTGTCGAACC CGCCGCCGCG GAAGTATCGG TCCATGCCTA G
|
|---|
| Protein sequence | MISARSAEAL TAQAGRLMAH VQANPGLDPI DVGCSLASRS VFEHRAVVVG ASREQLIAGL
AGLAAGEPGA GVAVGQPGSV GKTVVVFPGQ GAQRIGMGRE LYGELPVFAQ AFDAVADELD
RHLRLPLRDV IWGADADLLD STEFAQPALF AVEVASFAVL RDWGVLPDFV MGHSVGELAA
AHAAGVLTLA DAAMLVVARG RLMQALPAGG AMVAVAASED EVEPLLGEGV GIAAINAPES
VVISGAQAAA NAIADRFAAQ GRRVHQLAVS HAFHSPLMEP MLEEFARVAA RVQAREPQLG
LVSNVTGELA GPDFGSAQYW VDHVRRPVRF ADSARHLQTL GATHFIEAGP GSGLTGSIEQ
SLAPAEAMVV SMLGKDRPEL ASALGAAGQV FTTGVPVQWS AVFAGSGGRR VQLPTYAFQR
RRFWETPGAD GPADAAGLGL GATEHALLGA VVERPDSDEV VLTGRLSLAD QPWLADHVVN
GVVLFPGAGF VELVIRAGDE VGCALIEELV LAAPLVMHPG VGVQVQVVVG AADESGHRAV
SVYSRGDQSQ GWLLNAEGML GVAAAETPMD LSVWPPEGAE SVDISDGYAQ LAERGYAYGP
AFQGLVAIWR RGSELFAEVV APGEAGVAVD RMGMHPAVLD AVLHALGLAV EKTQASTETR
LPFCWRGVSL HAGGAGRVRA RFASAGADAI SVDVCDATGL PVLTVRSLVT RPITAEQLRA
AVTAAGGASD QGPLEVVWSP ISVVSGGANG SAPPAPVSWA DFCAGSDGDA SVVVWELESA
GGQASSVVGS VYAATHTALE VLQSWLGADR AATLVVLTHG GVGLAGEDIS DLAAAAVWGM
ARSAQAENPG RIVLIDTDAA VDASVLAGVG EPQLLVRGGT VHAPRLSPAP ALLALPAAES
AWRLAAGGGG TLEDLVIQPC PEVQAPLQAG QVRVAVAAVG VNFRDVVAAL GMYPGQAPPL
GAEGAGVVLE TGPEVTDLAV GDAVMGFLGG AGPLAVVDQQ LVTRVPQGWS FAQAAAVPVV
FLTAWYGLAD LAEIKAGESV LIHAGTGGVG MAAVQLARQW GVEVFVTASR GKWDTLRAMG
FDDDHIGDSR TCEFEEKFLA VTEGRGVDVV LDSLAGEFVD ASLRLLVRGG RFLEMGKTDI
RDAQEIAANY PGVQYRAFDL SEAGPARMQE MLAEVRELFD TRELHRLPVT TWDVRCAPAA
FRFMSQARHI GKVVLTMPSA LADRLADGTV VITGATGAVG GVLARHLVGA YGVRHLVLAS
RRGDRAEGAA ELAADLTEAG AKVQVVACDV ADRAAVAGLF AQLSREYPPV RGVIHAAGVL
DDAVITSLTP DRIDTVLRAK VDAAWNLHQA TSDLDLSMFA LCSSIAATVG SPGQGNYSAA
NAFLDGLAAH RQAAGLAGIS LAWGLWEQPG GMTAHLSSRD LARMSRSGLA PMSPAEAVEL
FDAALAIDHP LAVATLLDRA ALDARAQAGA LPALFSGLAR RPRRRQIDDT GDATSSKSAL
AQRLHGLAAD EQLELLVGLV CLQAAAVLGR PSAEDVDPDT EFGDLGFDSL TAVELRNRLK
TATGLTLPPT VIFDHPTPTA VAEYVAQQMS GSRPTESGDP TSQVVEPAAA EVSVHA
|
|---|
| |