| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1874 |
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| Symbol | |
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| ID | 5204695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 2330561 |
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| End bp | 2332681 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640600105 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_001280764 |
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| Protein GI | 148653671 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.331721 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTACTT TTAATAATAA GACTGTCTAT ATGCTAAAAA ATATTTCTAC TGATACCCTC
ACCTCGACGA CGCAGACCTT GTCCAAAGCG GGCCATGTCT TGGTAAATAA GCTGGGGCCC
AAAGCGCCAC TTGCTGTCTC ATTACTCGGT CTAATGGGCA TGACTCAGAT TGCCTGTGCG
CAGCTGTCTT TTCAAGAAAA CACTCAAAAC TATGCCAATG ACACCAGCAT CAATTATTTT
AATGAAGCTA TGGCAGCAGG TGATCGTAAA GACTCTGGCG CCTTGTATCA GTATGAGCAA
ATGATGGGCA ATGGCTTATT TGCTATGTAT CCGGCCTATT GGCGCTTGAA CAATGATTTA
TCGACCTTAA ACCCTGCTGT GGTGACTCAG TTTGCCAAGC AGTATGCCGG TAGCGTTATG
GCTGAGAAAT TGACCGCTGA CTATGCTGAG GTCAAAGCGC AGGCGGGGGA TTACAACGCA
GTGCGTCAAG TGGCCAACTA TGTCCATAAT CCTGATGACA GTGAAAAATG TGCGGTGGCC
TTGGGTTTCA ATAATGGCGG TGATGCCATG CGTGCCATGT CGCTTAAGAC TGAGGTGTGG
CTCACCACCA AAAAACAAGC TGCCCTGTGT TCGCAATTGG CGACAGAGAT GAACAACAAC
CCTATGATTA GCAATAATGA TCGCAAAGAG CGGTTACTGC GCATGCTAAG GGTGGGCAGT
ACCGGTGATA TTATGATCCT ATCACAGTCG CTCGGCACGC CCATTGCCTA TAGTGAGCTG
AGCGAAATTC AGCTTAATCC TACTGGATTT ATTAGCCGCT TTGCTAGTCT GCCTAATAGC
GTAAAAAATC AATATTTATA TCTTTATGCC ATTGGTCGTA TCGCCGATAA ATCTTATCGA
GAGGCGGCCA TTCAAGTAGA TTATGATATC AACCAAGACA ACAACCGTGC TCAGAAGTTG
CTGAACGAAG AGACACGCCA TTATGCCTAT CGTATTGTGG GTGTAAAGCG TATGAACTAC
AACACCGATG ATGGCTTTAA TGATGAAGCG GTGACTTGGT TTCGTAAAAG TTTGGGCGTA
AGCTTTAACT ATGAAGAGGC AGAAGACTAT GCCATGGCAG CCATCCGCTT TAGTCAATGG
GATGACTTAA TCCATGCCCT TGGTACGATG GATAATGCCA CTCAAAAAGA GAACATCTGG
CAGTACTGGT TGGCTCGTGC TTACGAACAA GTGGGTGATA GCAGCAAAAA AAGCTTAGCG
CGCCAGATGT ATCAGCGCTT GGCCAATAGC AGCGATTACT ACGGCTTGCT TGCAAAGGAT
AAAGTGGGCC AACGCTTTAA TGCCGGCTCT ACCGCTTTAC CCAACGTTTC AAGCGGTGAT
ACCGCACGTA TGCTTAATGA TCCGCATTTT GCCCGTGCCT TTGCGCTTTA TAATTCAAGC
GCCAGCCGTA CTTATGCCAA CCGTGAATGG AACTGGGCGG TAAAAAAAGC GCGTGACAAC
AAGGATAATA AATTGATTTT AGCTGCTGCA AAATATGCCC ACGATATGGG CTGGCTAGAT
CGTTCTATTT ATGCCATTGA CAATACGGAT GGTTTAGATG CCTTTAGTCT GTCACACCCT
ATGCCGCACC AGAGTGAAGT GGTGACTTAC AGCCGTCAAG TCGGTATTGA CCCAGCTTGG
GCGTATGGCA TCATGCGCCA AGAAAGCCGC TTTGTCAGTA ATGCTCGCTC AGGTGTGGGC
GCCAGTGGCT TAATGCAAAT CATGCCCGAT ACTGCCAAAT ACATTGCTCG CAATCTGGGT
GAGACTTATA GCGCCACTCG TGCCAATACT GGGGATACCA ATATTCGCTA TGGCACCTGG
TACATGAGTG ATATCATGGG CAAATTGTAT AATCAGCCAG TACTGGCCAC AGCTGGCTAT
AATGCTGGCC CCAATAAGGC CAAGCGCTGG CAGCCTGTGT ATGGCTCATT GGCGGCCGAT
CAATATGTAG AGACCATCGC TTATCCTGAG ACTCGAAACT ATGTCAAACG GGTCATGGAG
AATGCCACCA TTTATAGCAG TTTGCTTGGC GCTAACATGC CTATCACTCA GCGTATGGGG
ACGGTTCCTG CTGGCTATTA A
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| Protein sequence | MFTFNNKTVY MLKNISTDTL TSTTQTLSKA GHVLVNKLGP KAPLAVSLLG LMGMTQIACA
QLSFQENTQN YANDTSINYF NEAMAAGDRK DSGALYQYEQ MMGNGLFAMY PAYWRLNNDL
STLNPAVVTQ FAKQYAGSVM AEKLTADYAE VKAQAGDYNA VRQVANYVHN PDDSEKCAVA
LGFNNGGDAM RAMSLKTEVW LTTKKQAALC SQLATEMNNN PMISNNDRKE RLLRMLRVGS
TGDIMILSQS LGTPIAYSEL SEIQLNPTGF ISRFASLPNS VKNQYLYLYA IGRIADKSYR
EAAIQVDYDI NQDNNRAQKL LNEETRHYAY RIVGVKRMNY NTDDGFNDEA VTWFRKSLGV
SFNYEEAEDY AMAAIRFSQW DDLIHALGTM DNATQKENIW QYWLARAYEQ VGDSSKKSLA
RQMYQRLANS SDYYGLLAKD KVGQRFNAGS TALPNVSSGD TARMLNDPHF ARAFALYNSS
ASRTYANREW NWAVKKARDN KDNKLILAAA KYAHDMGWLD RSIYAIDNTD GLDAFSLSHP
MPHQSEVVTY SRQVGIDPAW AYGIMRQESR FVSNARSGVG ASGLMQIMPD TAKYIARNLG
ETYSATRANT GDTNIRYGTW YMSDIMGKLY NQPVLATAGY NAGPNKAKRW QPVYGSLAAD
QYVETIAYPE TRNYVKRVME NATIYSSLLG ANMPITQRMG TVPAGY
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