| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1817 |
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| Symbol | |
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| ID | 5206307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 2254617 |
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| End bp | 2257172 |
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| Gene Length | 2556 bp |
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| Protein Length | 851 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640600046 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_001280707 |
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| Protein GI | 148653614 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00513641 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATAAGG CAAAAATAAT CAAAAATTCT GTAAAGCGTA CGTTTAGCTA CTCGCTATTG
TGTGGCGTGG TAACCTTAAG TATTTCAGGT TTGGCATTGG CCGATGAGAC TGCCGGAAAT
GAGAATGCTG GGGCGATTTC TGCAGATTTT GATTCAGCAT TTTTGATTGG CGATGCCAAG
AAAATTGATA TTTCCAAGTT TGCTAATGGT AATCCTATTT TGCCAGGTGA ATATAGCTTA
GATGTTTATG TTAATGGTAA TTGGTTTGGC AAACAGCGCT TGGTATTTAA ACCTACCCCA
GATGACAAAA GCTCATTCAC TTGCTTTACG CCCAAACAGC TACTTGAATT CGGTATCAAA
GCGGAACTGA TTAAACAAAA GGCCAAAAAC TCTGCCAACA GTTGTTTGCC ACTTGAGCAG
TGGGTAGATG AGGCCTTTTA TAACTTTGAT ATGTCAAGTC TAAAGCTTGA GGTATCTATT
CCTCAAGTTG CTATGCAGAA TAATGCCCGA GGTTACGTTG ATCCTAGCAT CTGGGATAGG
GGTATTAATG CTGGCTTTGC CTCTTATAAC GCCAGTGCCT ACAAGACCTT TGATAGTACT
AACAATCAAG AAAACACCAA TGCCTTTGTC TCGCTCAATG CTGGACTTAA CCTAGCCAGC
TGGCAGCTGC GTCATAATGG CCAGTGGACG TGGTCAGACA ATGAGGATGG TAAGTCAGAA
TACACTGCGG TAAACACCTA TTTACAGCGT GCTTTTCCTG AGCAACGTGG AATACTTACT
TTAGGTGATA GCTTTAGTCA AGGTGATATA TTTGATACTT TCGGTTATCG CGGCGTAGCT
TTTGCCAGTG ATGATCGTAT GTTGCCCAGT AGCTTAAGTG GTTATGCCCC ACGCATTCGC
GGTAATGCGA AGACCAATGC TAAGGTAGAG GTTCGCCAGC AAGGCCAGCT CATTTATCAA
ACCAACGTAT CTGCCGGTAG CTTTGAGATT AACGATTTAT ATCCCACAGG CTTTGGTGGA
CAGCTAGACG TGTCTGTTAT TGAAGCCGAT GGCGAAGTAC AGAAATTCTC TCTTCCTTAC
ACCTCAGTGG CTCAAATGCT ACGTCCTGGG CTAAGCCGCT ATGCGGTGGT AGCGGGCAAT
TATCGCAATA AAGAGATTGA TAAAGATCCT TTGATTTTAC AAGGTCAATA CCAGCGCGGT
ATTAATAACT TTATTACTGC CTATGGCGGT GCACAGGCCT CTGAAGACTA TAAAGCTGTG
ACTTTGGGTA GCGCTTTTGC GACGCGATTG GGTGCGGTAG CTTTTGATGT CACCCACTCA
GATACGGACT TTAAAAACCG GGCCCCAGAG ACTGGACAAA GTTATCGTGT CAGTTATAGC
AAACTTATTA GCCCGACCAA TACCAATGTG ACTTTAGCTG CTTATCGTTA TTCAACACAA
GGCTTTTACC GTTTGGCAGA TGCTTTTAAA GCACAAGAAC AGGATGAAGA GGGTATTGGT
ACCTTATATA TTGGTAAACA GCGTAGTGAG TTTCAGGTGA CCTTGAACCA AGGATTACCT
AATAAGTGGG GTAACTTCTA TTTAACTGGG GCTTGGGTGG ATTATTGGGA CAAACAAGAA
GATACTAAAC AGTATCAGTT CGGTTATAAC AACACGTACA AAGGTGTCAG CTATGGCTTA
TCTGCCAATA AACGTGTGGT AGAAAATGCC ACATCAGGCA AAGTTATCGA CGATACTGAA
TATATGTTGA CCTTGTCACT GCCACTATCG ATTAAACGCA AAGCAGTCAC TCTTAACTCA
TACGCTACTC AAGACAATAT CACGGTGGGT ATCAATGGCT CGCTTGGGGA TAGAACAAGC
TATGGCGCTA CGTTATCTAC TGACTATGGC GAAAACCCAA GCTTAAATAC CAATGCTCAG
TATCGCAGTA ACTATGCTAC TTTAGGCGGC ACTTACTCTG TAGCCGATGG CTATCAACAA
CTGGGTCTGT CTGCTGGAGG TAACATAGTA GTACACCCAG AGGGTGTGGT ATTTAGTCCT
GATCAGGGAA GAACCATGGT ATTGGTTTAT GCACCAGGTG CTGAAGGTGC TAAAGTGAAT
AATACCGATG AGCTTACCAT TAATAAATCT GGCTACGCAG TTATCCCTTA CGTTACTCCT
TACCGAATTA ATGATGTATC ATTAGATACC GTAGGCATGT CCGATGATGT AGAGCTTGAG
GGTGCAAGTC AACGAATCGC TCCGTATGAA GGCTCGGTAA CTAAGGTAGA TTTTTTAACC
AAATTAGGTA AAGCCATATA CATCAATACG GTTGATGACA AAGGCAATAC ACTGCCTTTT
GGTGCAGATG TTGTTGACTC AAACGATGAA CATATTGGTA TAGTTGCTCA AGGAAGCTTG
GTATACTTAC GGACACCAAA GTTATCTGAT ACCATCACCG TTAAATGGGG TGATGAACAA
AATGAGCAGT GTCAAATGTC GTATGATATA ACCAATTTAG CCAAAGATAA AACTCAACCA
ATGATTACCC TAGAAGGGGT ATGTCATGGA TTGTAA
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| Protein sequence | MDKAKIIKNS VKRTFSYSLL CGVVTLSISG LALADETAGN ENAGAISADF DSAFLIGDAK
KIDISKFANG NPILPGEYSL DVYVNGNWFG KQRLVFKPTP DDKSSFTCFT PKQLLEFGIK
AELIKQKAKN SANSCLPLEQ WVDEAFYNFD MSSLKLEVSI PQVAMQNNAR GYVDPSIWDR
GINAGFASYN ASAYKTFDST NNQENTNAFV SLNAGLNLAS WQLRHNGQWT WSDNEDGKSE
YTAVNTYLQR AFPEQRGILT LGDSFSQGDI FDTFGYRGVA FASDDRMLPS SLSGYAPRIR
GNAKTNAKVE VRQQGQLIYQ TNVSAGSFEI NDLYPTGFGG QLDVSVIEAD GEVQKFSLPY
TSVAQMLRPG LSRYAVVAGN YRNKEIDKDP LILQGQYQRG INNFITAYGG AQASEDYKAV
TLGSAFATRL GAVAFDVTHS DTDFKNRAPE TGQSYRVSYS KLISPTNTNV TLAAYRYSTQ
GFYRLADAFK AQEQDEEGIG TLYIGKQRSE FQVTLNQGLP NKWGNFYLTG AWVDYWDKQE
DTKQYQFGYN NTYKGVSYGL SANKRVVENA TSGKVIDDTE YMLTLSLPLS IKRKAVTLNS
YATQDNITVG INGSLGDRTS YGATLSTDYG ENPSLNTNAQ YRSNYATLGG TYSVADGYQQ
LGLSAGGNIV VHPEGVVFSP DQGRTMVLVY APGAEGAKVN NTDELTINKS GYAVIPYVTP
YRINDVSLDT VGMSDDVELE GASQRIAPYE GSVTKVDFLT KLGKAIYINT VDDKGNTLPF
GADVVDSNDE HIGIVAQGSL VYLRTPKLSD TITVKWGDEQ NEQCQMSYDI TNLAKDKTQP
MITLEGVCHG L
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