| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1569 |
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| Symbol | |
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| ID | 5204872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 1925907 |
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| End bp | 1927256 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640599791 |
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| Product | WD40 domain-containing protein |
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| Protein accession | YP_001280460 |
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| Protein GI | 148653367 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00119024 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTTTGA CACCCTTGCA ACAACAGCCT AACCTTTTTG GTCATACCGC CGCTCGCCGC
AGCTTTGCGG CAATGACTAC CACACTGCTG ATATCCTTAC TTGGTGCCAG TGCTGCTTTG
ATGAGCGTGA GTGCTCAGGC AGCTGAAGAA GAGTATGATC TTGAGGCCAC CATTACCAAA
AAAGGGGAGA CCAATCAAAA CCAGGTGGCT TTTGTCCCCT TTGCTGGTGA CAGTACTGTC
TCAAGCTTGA TTGAAAACAA CTTACAAGCC ACTCCTTTAA AGATTACCAG CCAAGGCTTA
ATCGGTCAGC CACACAGCCG TGATGATCTG GCTGTCACCT TGCCAGCTTG GCAGCAACTG
GGCATTCCTT ATCTGGTTAT TGGCAGCAGC AAGCAACAAG GCGGCAATAC CAGCATTACC
TTTGAAGTCA TTGAGGTGGC CCAAGGCCGC ATTATTAAAG GCACTCAAAT GGTTCAGGGT
GTCGATAAAA AAGCGGCTGC CAATAAGGCG GCAGGTCGGA TCTATGAGCT GCTAACCGGT
AAACAAATCG ACTTAAACGC TCGACTGGTC TATGTTGAAG AAAAAGGCAG TGGCAAATCA
AAAACCTCAT CGCTGATATT AAGTGATGCC GATGGCAGTA ACAAACGCCT ATTGGCACAA
GTGATTGATG CGGCTATCTA TAGCCCAGCC ATCTCTCCTG ACGGCCGCTT TGTGGCTTAC
TCAGTACAGT TAAAAGACAA CAGTGCCAAC TTGTGGAAGC AGGACTTACA AACTCGCCAA
TTAACCCGCT TGGTCGACAT GAAAGGCAGT AATCTTAGCC CTAGCTTCTC ACCAGATGGC
AGCAAGATTT TATTCTCAAG CACAGTCAAT GGTGACTCTG ATATCTACCG AGTCAGTAGC
CAAGGCGGTA AAGCAGAACA AATCATCAGT CTGCCTTATG ATCAGCTAAG TCCAAGCTAC
GCTTCAAATG GCAGCTTTGT GTTCGTCTCC GATCATGCCA GCCCCAATCG CCCCAATATT
TATCGCTACA GCTTCTCAGG GTCACCGGTA CAAATATCAC GCGGTGGATA TGCTGCAAAC
CCAAGCATAA GCCCTGAAGG TACAAAAATT GGCTATCTAA GTGGTCGTAG TGCCGCCATT
ATGAGCAGTA ATGGCTCAAA TGTTGCCAAC TACGGTGCCA CTGGCATCGA TGCTGCCCCT
AAGTTCTCAC CCACCGGTGA GCGTGTGGTA TATTCACAAG GTACCAAAAA CAGCAATCTG
GTTATTCGCT ACGTCGATGG CGGTAAGACC ATAACGCTAC CCACAGAAGG TGTCGCCAAA
TTCCCAGTTT GGGTGCCCAG CGCCCAGTAA
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| Protein sequence | MTLTPLQQQP NLFGHTAARR SFAAMTTTLL ISLLGASAAL MSVSAQAAEE EYDLEATITK
KGETNQNQVA FVPFAGDSTV SSLIENNLQA TPLKITSQGL IGQPHSRDDL AVTLPAWQQL
GIPYLVIGSS KQQGGNTSIT FEVIEVAQGR IIKGTQMVQG VDKKAAANKA AGRIYELLTG
KQIDLNARLV YVEEKGSGKS KTSSLILSDA DGSNKRLLAQ VIDAAIYSPA ISPDGRFVAY
SVQLKDNSAN LWKQDLQTRQ LTRLVDMKGS NLSPSFSPDG SKILFSSTVN GDSDIYRVSS
QGGKAEQIIS LPYDQLSPSY ASNGSFVFVS DHASPNRPNI YRYSFSGSPV QISRGGYAAN
PSISPEGTKI GYLSGRSAAI MSSNGSNVAN YGATGIDAAP KFSPTGERVV YSQGTKNSNL
VIRYVDGGKT ITLPTEGVAK FPVWVPSAQ
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