| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1562 |
|---|
| Symbol | |
|---|
| ID | 5206767 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 1916201 |
|---|
| End bp | 1916959 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640599784 |
|---|
| Product | beta-lactamase domain-containing protein |
|---|
| Protein accession | YP_001280453 |
|---|
| Protein GI | 148653360 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.20369 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000036598 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTGC CGAATATTAT TCAGCTAGAT GGGCACATTC AAACCTTGTA TTTGGCCGTC
TATCCGGACA AGTTGCTGCT GTTAGATGGT GGCTGCCGCT GTGATGTGTC TTTGGTATTA
AGTTATATAA CAAATGAGCT CAAGCGGCCC ATTACTGATT TAAAAATGGT GGTGGTTACC
CACATGCATG TGGATCATGC AGGTGGGGCA TTAAGCTTTA AGCAAAAGAC CGGCTGCGTT
ATTGTCTCCT CAGACAATAA TACGCAGTGG TATCAGGGTA TTCATGGGCG TGCGATGCAT
GTGATTGATA TCGGCTTGGC TTATTATGTG GCCAGACGCT TAGGTAAGCC GCTTAAATAC
TTGTGGTATC CGGCATATTT GACCCCAGAC ATTCAGGTAA AACAGGGCGA TAGGCTACCA
GGCTTTGAGG ATTGGCAAGT GATGTCTACC CCAGGACATA CCGACCGCGA CTTATCCCTT
TATCATCCTG AGCTTGAAGT GGTATATACC GCAGATTTAA TTGTCAAGCT GCGTCATAAA
TTCGTCGCAC CGATGCCCGT TTATTGGCCG AAGCGTTACC GGCAGTCGCT CGAGATGATT
AAACAACTTC GACCAAAGCA AGTGATGATG GCCCATGGTG GTGCAAGATA TATCGAGCCG
GAGCTGTTTG ATCAATTAAT TGCAAAAGCT CCCAAGCAGC CATTCACTGT CAAGCGCACC
ATAAAGCATA AGCTGTCTTG GTGGTCTACT AAAAAATAG
|
|---|
| Protein sequence | MSLPNIIQLD GHIQTLYLAV YPDKLLLLDG GCRCDVSLVL SYITNELKRP ITDLKMVVVT
HMHVDHAGGA LSFKQKTGCV IVSSDNNTQW YQGIHGRAMH VIDIGLAYYV ARRLGKPLKY
LWYPAYLTPD IQVKQGDRLP GFEDWQVMST PGHTDRDLSL YHPELEVVYT ADLIVKLRHK
FVAPMPVYWP KRYRQSLEMI KQLRPKQVMM AHGGARYIEP ELFDQLIAKA PKQPFTVKRT
IKHKLSWWST KK
|
|---|
| |