| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0889 |
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| Symbol | |
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| ID | 5204946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 1056928 |
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| End bp | 1058337 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640599108 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001279789 |
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| Protein GI | 148652696 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00118198 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACACT CGCACCTTTT CATTGCTATT AGCTTAGCTG TATCTGGTTT ATTTATTGCC
GGTTGCGACA AAAAAGATGA GGCTGCAGAT GCTGCCGCTT CTCAGCAGCA AATGCCGCCC
GCTGTGGTCA ATGTCATTCC TGTACAATTC CAAACAGTTC CTTTAGTTCA AGAATTCTCG
GGTCGTACAG CGGCTTATGA GGTTGCCGAT ATCCGCCCTC AAGTTACTGG GGTGGTAGAT
GAAATCTTAT TTCCGCAAGG CCGCATGGTC CAAAAGGGTC AGCCTCTATA TAGAATCAGC
CCAGAAAACT ACCAGTCTAG CGCCGGCGCC AATCAAGCCG CTGTACAACA GGCTCAGGCC
AATGTAGAGA CTGCTAAAGC AAGCTATAAC AATGCTTTGG CCAATATTGA GTCACAAAAA
GCATTGTTAG AACAAGCTCA AGCTGATGTG CGTCGCCTTA AACCCTTGGT TGCTCAGCAA
GCCATTTCAG AGCAGCAGTA CGAGCAAGCC ATGACTCAGC TAAAAACAGC ACAAGCAGGT
CTAAATAGTG CTCAGGCGGC GGCACAACAA GCCCAAGCCA ATATCGCAAG CTCACAAGCT
GCGGTAGCCA CAGCGCAGGC TCAGTTATCG GGCAGTCAAT TAGATATCAG CCGTACCATT
GTACGCTCGC CCATTTCAGG CGTCACTGAG CGCTCAAGCG TCACCGCTGG TGCCTTGGTA
AACGCCAACC AAGCCAATCC TTTGGTTACT GTCTCAAAAA TCGATCCGAT TTATGTTGAT
ATCAGCCAGT CCTCTAGCGA GCTATTAAAG CTAAAACAAC AGCAAGCTAA AGGCTCAATA
CAAGCTGGTA CCAGCACCGT TGAGTTGGTA TTTGAAGATG GATCGACGTA TCCGGTGCGT
GGCCAATTGT CACTGGCTGA AGCCAAGGTT GAGCAAGATA CCGGGGCGGT CACCCTACGT
GCTATTTTCA AAAATGATAA CTACATGCTG CTGCCAGGTA TGTATGTAAA AGCCCGATTA
ATTCAAGGCT TGATTAATAA CGCGGTGTTA TTGCCACAAA GCGCTATTAT GCGTACGCCA
AAGGGTGAAA CCCAGGTGTA TATTGTTGAT AAAAACAATA AGATTCAGGT TCGTAATGTC
ACTATCGAAG GCACTTATCA AGGCCAGTGG ATTGTGACTG ACGGCCTGCA ATCAGGGGAT
AATGTGGTGG CCATTGGTGG CGCCAAAGTT AAGCCTGAAC AAGAGGTGGT CAGTAAGCCT
TATGTACCGA CCTCTAGCGA AGGCGGCGCA GCCCCTCAAG CAGGTGGCGC ACCTAACCAA
GGGCAAGCCC CCGCCGCCAA ATCTGAAATG CCAAAAGGCC CTGTAGCCCC TCAAGCGCAA
AAGTCGCCTG AAGATGACGC TGCAAAATAA
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| Protein sequence | MKHSHLFIAI SLAVSGLFIA GCDKKDEAAD AAASQQQMPP AVVNVIPVQF QTVPLVQEFS
GRTAAYEVAD IRPQVTGVVD EILFPQGRMV QKGQPLYRIS PENYQSSAGA NQAAVQQAQA
NVETAKASYN NALANIESQK ALLEQAQADV RRLKPLVAQQ AISEQQYEQA MTQLKTAQAG
LNSAQAAAQQ AQANIASSQA AVATAQAQLS GSQLDISRTI VRSPISGVTE RSSVTAGALV
NANQANPLVT VSKIDPIYVD ISQSSSELLK LKQQQAKGSI QAGTSTVELV FEDGSTYPVR
GQLSLAEAKV EQDTGAVTLR AIFKNDNYML LPGMYVKARL IQGLINNAVL LPQSAIMRTP
KGETQVYIVD KNNKIQVRNV TIEGTYQGQW IVTDGLQSGD NVVAIGGAKV KPEQEVVSKP
YVPTSSEGGA APQAGGAPNQ GQAPAAKSEM PKGPVAPQAQ KSPEDDAAK
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