| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0877 |
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| Symbol | |
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| ID | 5205750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 1041769 |
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| End bp | 1043397 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640599098 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001279779 |
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| Protein GI | 148652686 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.359976 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00000108541 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTGAGT TGAAAATTGG TCGATTGGGT CCTTTTCCCA AGGTCAATAA GCCGGTATTT
ATAGCCTCAG TTGTATTGAT TGTCGGGTTT ATCATTTTTG GGGCTCTATT TCCAAAAGTG
GCCAATACCG TATTTACACA AGCCCAAAGC TTTATTACCC ACAGATTTGG TTGGTTTTTT
ATTGTGGTCA TGAATGCCGC AGTGGTGATG TGTCTGTATT TAATTTTTAG TAAATATGGC
GACATTCGTC TGGGACATCA GACTGAAGCA CCGCAGTATA GTTTGCCATC TTGGATTGGC
ATGTTGTTCT CGGCAGGCAT TGGTATTGGT ATTATGTACT GGGGTACTGC TGAGCCAGTG
TACCATTTTA TGGCACCACC TTTGGGCGAG AAAGAGACCG TGGAAGCCGC TAAACAGGCG
ATGAACATCT CATTTTTGCA TTATGGTATT CATGCTTGGG CTATTTATGC GTTTGTGGCG
CTGTCTTTGG CCTATTTTCA TTTTCGCCGT GGTTTACCAC TGGCCATTCG TTCAGCGCTA
TACCCTATAT TAGGTAAGCG CATTTATGGC GGCTGGGGCC ATACGGTAGA TACCTTAGCG
GTATTTGGTA CCATGTTCGG TGTGGTGACA ACTTTGGGTC TTGGCGTGTT ACAGATTAAC
TCAGGTCTAG AGGGCCTATT TAGTCTGCCC AATAACATCA CCATACAGAT TGTGTTGATC
GGCTTTATTA CCTTACTGGC CTGTGGCTCA TTAATGCTAG GCTTGGACAA AGGTATCAAG
CGGTTAAGCG ATCTTAATAT CTTTTTGACC TTTGTGCTGT TGGCTTTTGC TTTTATATTG
GGCCCCAGTC AGTACATTAT GGACAGTTTC GTCGAAAATA TTGGTAATTA TGCCCAAAAC
CTAATTCAGT TGGCCTTTTG GAATGAAGCT TACTCTAAGA CAGATTGGCA GTCTGCTTGG
ACCATTTTCT ATTGGGCTTG GTGGGTAAGT TGGTCACCTT TTGTTGGTGT CTTTATTGCT
CGTATTAGCC GTGGCCGCAC CATTCGTGAG TTTTTATTGG GCGTGCTATT TGTGCCAATG
GCTATTTTAT TCTTCTGGTT CACTACCTTT GGTGGGGTGG CGGTGAATAT GGAGCTACTA
GGCAACCCAG GCTTTATCGA AGTGGTGCAA AATGATTATG GTAATGCCAT CTTTAAACTG
ATGGAGTTCT ACCCCTTTAC TCAGGCCACC ACCTTGCTGA TTGTGGTGAT GATTGTGCTG
TGGTTTGTGA CCTCATCAGA CTCTGCAAGC TTCGTGATTG ATATGTTAAC CTCAGGTGGT
GATGCCAATC CTCCTAAGAT TCAACGTCTA TTTTGGGCAG TGGCTCAAGG ATTGGTAGCT
GCTATTTTGC TGGCAGCGGG TGGATTGGGT GCGTTACAAG CGGCAGCTAT TGTGGCAGGC
TTTCCATTTG CCGTGGTGAT AGTGGTGATG ATGTACTCCT TAATGCGAGG TTTAAGCCGT
GACCGCTTAA TCTTATACCG CGCTCATCAG TGGTTTATTA CCGAGGAGTC GGCTGAGCAC
AATACTGCTG ATGAATTCGT TGATGAAGAG CTGTTGAAAG GTCCCCCTAA GATTATCTCA
GGCGATTAA
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| Protein sequence | MSELKIGRLG PFPKVNKPVF IASVVLIVGF IIFGALFPKV ANTVFTQAQS FITHRFGWFF
IVVMNAAVVM CLYLIFSKYG DIRLGHQTEA PQYSLPSWIG MLFSAGIGIG IMYWGTAEPV
YHFMAPPLGE KETVEAAKQA MNISFLHYGI HAWAIYAFVA LSLAYFHFRR GLPLAIRSAL
YPILGKRIYG GWGHTVDTLA VFGTMFGVVT TLGLGVLQIN SGLEGLFSLP NNITIQIVLI
GFITLLACGS LMLGLDKGIK RLSDLNIFLT FVLLAFAFIL GPSQYIMDSF VENIGNYAQN
LIQLAFWNEA YSKTDWQSAW TIFYWAWWVS WSPFVGVFIA RISRGRTIRE FLLGVLFVPM
AILFFWFTTF GGVAVNMELL GNPGFIEVVQ NDYGNAIFKL MEFYPFTQAT TLLIVVMIVL
WFVTSSDSAS FVIDMLTSGG DANPPKIQRL FWAVAQGLVA AILLAAGGLG ALQAAAIVAG
FPFAVVIVVM MYSLMRGLSR DRLILYRAHQ WFITEESAEH NTADEFVDEE LLKGPPKIIS
GD
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