| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0399 |
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| Symbol | |
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| ID | 5204765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 485000 |
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| End bp | 486928 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640598613 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_001279304 |
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| Protein GI | 148652211 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00359523 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGTTTT TTAGGCCTGA GGTTTATCAG CTACGGCTCA AATTTAGGGC AATGCAAGCG
CTCACACTGG CGGTGACTAC CAGTCTTAGC AGCCAAGTAC CAGCGGCAAC TTCTGCACTC
ATCAATGTGC AAGAGCAGCC AGATACTGTC ACTGCTAAAG CGTTCAACTC TTTTGCCGCG
CCTTATCAGA TTGACTATCA GCGCCTGTCT GAAAATCAAG AGATGCTGCA GATTGCATTA
GATAATCCGG ACACCCAGAT TGAGATTAAG CGCCAAGGCA ATACATTACT AGTGCGCTTA
AAAGGGGTGA CAGCCTCATC AGTACACGGG TCAATGCCTG TACTTGGCCA GAAGCTCACT
GGGTTATTAC AACGTATTGA GGCCGAGCAG CGCGGTAAAG ACACTTGGCT TATCTTCACG
GTATCCAAAG ATTTTGAGTA TCAAAGCTAT CAATTAGATA ATCTCATTAA AATCCAGATT
CAGCCGGTCA GAGCAATTCA ACAAAATACT GTCACCCCAA AAATATATAG CGGCAAACCC
ATTTCGGTGG ACTTCCAACA GGTTGAGGTG CGCAGCGTGC TGCATCTGTT ATCTCAATTT
ACCGATACCA ATATTGTCGC CACTGATCAA GTAACAGGCA GCTTAATGCT CAATTTGGTC
AATGTGCCTT GGGATCAGGC GTTAGATATT ATCCTTACCA GTCAGCAGCT GGGCAAACAA
ACCCAAGGTA ATGTAATTTT GGTTGCGCCA CTGGCACAGA TGGCCAAACA GCGGGCCCAG
CAGTTAGCCA TTGAGCAGCA GTCTCAAGCA CTGATGCCAC TGCGCAGTGA GTATATTCGG
CTTAATTATG CCAAGGCAGA AGACCTACAA GCCTTGATTA TTAAAGCCAG TGGCAGCCCT
ACACCTACCC CTGTGGCCAT GCAACATCTA CCGGCTTCAA CGGCCGTCGC CAATGCACCC
TCAGCGTTAC CTGCTGTAGT AACACGCTTG AACTTGCCTG TCAGTAGCCG CTTGCTATCG
AGCCGAGGGG TGATTGCAGT AGATGCGCGT ACCAATACTT TAATTATCAA AGATACCGCT
GATAGCCTGT CCAATATTCA CGCTTTGATT AAGCAGATAG ATATCCCAGT GCGTCAGGTA
ATGATTGAGG TCAGAATGGT TAGTGCCACC GACAACTTTA GCAAAGAGAT GGGGGTTAAA
TGGGGGTTGT TATCAAAAGG AGTGGCGCAC AATGATGATC TGTTAGTGGG CGCAAGTGAT
CAAACTTTGG CTGATTTAAA AAGCTTTAGT GCTCCAAATA CTGCTTATAA AGGCCGTAAT
AAAAGTCGAG CGGGATACGC TATTACTCGC CCAGACAATC TTAATGTCGA CTTAGGGATT
AGCAATCCGG CCGGACGTAT TGCATTTGGT CTACTTAGCA TGTCAGATTT GATGATTGAT
TTGGAATTAT CGGCGATGCA GGCTGAAGGC CGTGGCGAAG TTATCTCTAC CCCTAAGATA
CTGACTTTGG ACAAACAAAC GGCCACTGTA TCTTCTGGAA CCAAAATCCC TTATCAAAGT
GAGTCAGAAG GCGGTGGTAC CACCACTCAG TTTGAGGAGG CCTTATTGAG CCTACAGGTC
ACGCCTAGTA TCACGCCAGA AGACAAAATA TCATTACAAT TAAATATCGA AAATGGCCGG
CCCAATCCTG TCGGCAATGG GGTGATATTG ATAGATACAG ACCGATTAAT CACCAGAGTA
ACTGTCGGTG ATGGTCAAAC TCTGGTACTG GGCGGTATTT ATCGCAATCA GATTTTTAAT
AATACCCAAA AGGTGCCTTT TTTTGGTGAC TTGCCTTATA TAGGCCGCTT ATTTAAACAA
GACTTGCGCC GTAATGACCA ACAAGAGCTG CTTATCTTTG TCACCCCTAA GCTGATGCAG
CTGCCCTAA
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| Protein sequence | MMFFRPEVYQ LRLKFRAMQA LTLAVTTSLS SQVPAATSAL INVQEQPDTV TAKAFNSFAA
PYQIDYQRLS ENQEMLQIAL DNPDTQIEIK RQGNTLLVRL KGVTASSVHG SMPVLGQKLT
GLLQRIEAEQ RGKDTWLIFT VSKDFEYQSY QLDNLIKIQI QPVRAIQQNT VTPKIYSGKP
ISVDFQQVEV RSVLHLLSQF TDTNIVATDQ VTGSLMLNLV NVPWDQALDI ILTSQQLGKQ
TQGNVILVAP LAQMAKQRAQ QLAIEQQSQA LMPLRSEYIR LNYAKAEDLQ ALIIKASGSP
TPTPVAMQHL PASTAVANAP SALPAVVTRL NLPVSSRLLS SRGVIAVDAR TNTLIIKDTA
DSLSNIHALI KQIDIPVRQV MIEVRMVSAT DNFSKEMGVK WGLLSKGVAH NDDLLVGASD
QTLADLKSFS APNTAYKGRN KSRAGYAITR PDNLNVDLGI SNPAGRIAFG LLSMSDLMID
LELSAMQAEG RGEVISTPKI LTLDKQTATV SSGTKIPYQS ESEGGGTTTQ FEEALLSLQV
TPSITPEDKI SLQLNIENGR PNPVGNGVIL IDTDRLITRV TVGDGQTLVL GGIYRNQIFN
NTQKVPFFGD LPYIGRLFKQ DLRRNDQQEL LIFVTPKLMQ LP
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