| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0398 |
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| Symbol | |
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| ID | 5204764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 483523 |
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| End bp | 484932 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640598612 |
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| Product | Tfp pilus assembly protein PilO-like protein |
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| Protein accession | YP_001279303 |
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| Protein GI | 148652210 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3167] Tfp pilus assembly protein PilO |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0029887 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCTAG CTGCTCGCGT CAAAAAAACA GGGCAGGTTA AAGGGCGCAT TTGGCCACTT
ATTTATCAAA TGCAAAGTCT AGATACCCAA AACTATGGTA GCTGGCCGAG GTTCGTTAAA
GTTTTTATTA TTCTGCTTAT CACACTGAGT ATGGCTGTGA TTAGCTATAT GCTACCGATT
CGTCAGCAGT TGGCTCGTAT TGAGGCGGCG CAAAATCAAC ACCAGGTTTT ATTGGCCGCC
GCCAATGAAA AGCAGCTTAA ACTTAAACAG TTACCTGACA ATGATGCCCA GATCCAAGCC
TTACAGCAAG GCTTTATTGA GCAGATACAG CGCCTTGGTC TGCTTGATAG CTCCGATAAT
TCACAACCAC AGAGTTTAAC AGGTGAGGCT GTAGAGCCAT CATTTGCTGA GCGTCAGATG
GCAAGTGGCG CAGCGCCCTC AACGCTACTA CAACAAATCA CTGAAGCGGG TCGCAGCAAT
CATATCGTGT TCAAAAAGTT AGCCTTGCCT ACGCAGTCGG TTGCTCACAA AGACTCTGAT
AACCGCTCGG ATCAGCTGAT GCCAGCAGAC ACAGTAGATG CTGCCAATTC CAGCTCTAAT
AAGGATATCT CCCCACAGGT TAGGACAGCA GCCACTGCCG AAAAGCTGTT TATTGAGCAG
CCTATGACCC TCTTAGCCGT GGCCGAATAT CAGCAGTTAG GAGGTTTTTT GGCGGATTTA
GCGTTGCTAC CTAAGCTGAT AGTGGCACAT GATTTTGAAT TAACACGATT AAAGACCGGT
AGCACCTTAC AGCCGCAATT GTCTTTGAGG CTACAAGCTA ACGCTTATGT TTTGAGCGCT
GAGACTCAAG CTAAACTTGG CAATTTAGCC TTAAATAGCC TGTCAGACTC AGATAATCCT
AAGACAACTC GTACAAATAG GTCGCATACC GATAAAACCC AGACAAATTC TTTGCCCTCC
ACTGTCTATC AGACAGCATC TAACCGTGAT CCTTTTGGAT TTAAGTCCAT ATTAGTTCAA
CACAGCGCTG CGCCAGATGT GACGGTAGTA CAGGCTGGCA AGCCGGCAGC TAACCTTGAC
GTAAATAAGG CAGATAACCT GACCAATGCA GTTATCCCGC CAGCTGTGTG GTCAGGAGAG
GGCAGCGGCC GCATACGCCA AGCGATGGAA TATTATGGGC TATCTCAGCT GACCTATCGC
GGGATGATGG GGTGGGGAGC TGCCACCACA AAAGGTCTGG TGCAGCGGCC AGATGGGGTG
ATTACTGCTA TAAAAATAGG TGATTATCTG GGACTGCATC AGGGCCGAGT GGTAGAGATT
ACGCCCACTC ATCTTAACTT GGTAGAAACG CTGCTCACCC CAGAGAGCGG TAAAACTAAG
CGCAGAGTCA GTCTAATCGC CCCCTTTTAG
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| Protein sequence | MSLAARVKKT GQVKGRIWPL IYQMQSLDTQ NYGSWPRFVK VFIILLITLS MAVISYMLPI
RQQLARIEAA QNQHQVLLAA ANEKQLKLKQ LPDNDAQIQA LQQGFIEQIQ RLGLLDSSDN
SQPQSLTGEA VEPSFAERQM ASGAAPSTLL QQITEAGRSN HIVFKKLALP TQSVAHKDSD
NRSDQLMPAD TVDAANSSSN KDISPQVRTA ATAEKLFIEQ PMTLLAVAEY QQLGGFLADL
ALLPKLIVAH DFELTRLKTG STLQPQLSLR LQANAYVLSA ETQAKLGNLA LNSLSDSDNP
KTTRTNRSHT DKTQTNSLPS TVYQTASNRD PFGFKSILVQ HSAAPDVTVV QAGKPAANLD
VNKADNLTNA VIPPAVWSGE GSGRIRQAME YYGLSQLTYR GMMGWGAATT KGLVQRPDGV
ITAIKIGDYL GLHQGRVVEI TPTHLNLVET LLTPESGKTK RRVSLIAPF
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