| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0197 |
|---|
| Symbol | |
|---|
| ID | 5206319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 232943 |
|---|
| End bp | 234049 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640598409 |
|---|
| Product | IS605 family transposase OrfB |
|---|
| Protein accession | YP_001279106 |
|---|
| Protein GI | 148652013 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0675] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | [TIGR01766] transposase, IS605 OrfB family, central region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00374604 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.012481 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAC TCAAGCTACG CATCAAAGAC AAACATGCAA ACCAGCTAAA CAAACTAGCT
GGGAGTGTTA ACTATGCGTG GAACTATGTT AATGCGTTAA GCTTTGTGCA TTTAAGACGC
ACAGGTAAGT ACTTTTCGGC CTATGATTTA AGCCAATACA CCAAAGGCAG TGGAGAGTAT
TTAGGCTTGC ACTCGCAAAC TTTGCAAGCC ATCAACGAAA CTCATGCCAA ATCTCGTAAG
CAGTTTAAAA AAGCCAAACT TAATTGGCGA ACCAACCGAC CCGATGCCAA ACGCAAAAGC
CTAGGCTGGA TACCCTTTAA AAAATCAGCC ATCAAGTACC TAAATACAAG GCAAAGCGGT
AAAAAAGCAC TTAAATCAAC CATACAGCTA TCGCTCTGTA AAGGTCAAAA GCTTATCATA
GACGTATTTG ATAGCTATAA TCTAAGCCTA TATCAAATCA ACACGCTTGA GATAGTGCAA
GACAGCCGTC ATCGTTGGTA TGCCTGTATT ACCGTCAAAG ATTTTCCTAG ACAAGCAAGT
TGCAAAGGCA GCGTTGGTAT TGACTTAGGC TTAAAGCAGT CTGCTACCAC CTCAAACGGT
GACAAGCTAA CTATTAAGCA GACTCAAAAA TGGGCGAATA AATTAGCAGT CGCCCAGCGT
GCAAACAATA AAAGCCGGGT AAAGGCAATA CACGCCAAAA TTAAAAACTC AAGATTAGAT
GCCATACACA AATTCACCAC CCAATTAGTT AAGGATAATG CCTTAATTGT GGTTGGTGAT
GTTAAATCAC GCTCATTCAC TAATTCGATG ACCAACCTAG CTAAATCAAC ATACGATGCA
GGATGGTTTG AACTCAAAAG ACAACTGGAA TATAAATGCA AGTATGCAGG TTGTCAGCTT
GAGATGGTGA ATGAGAGTTA CACTACCCAA ACCTGTTCGC ACTGCCTTAA AATAAGTGAT
AGTAGTCCAA AAGGTAGAGC AGGTCTTGGA ATAAGAGGAT GGAGGTGTGC TGAGTGTGGC
ACATGGCATG ATAGAGATAT CAATGCTGCT AAGAACATCC TTGCGGTCGG GCTTGACCGT
CTAGTTGTAG GAATCCCCTC GGTTTAG
|
|---|
| Protein sequence | MKTLKLRIKD KHANQLNKLA GSVNYAWNYV NALSFVHLRR TGKYFSAYDL SQYTKGSGEY
LGLHSQTLQA INETHAKSRK QFKKAKLNWR TNRPDAKRKS LGWIPFKKSA IKYLNTRQSG
KKALKSTIQL SLCKGQKLII DVFDSYNLSL YQINTLEIVQ DSRHRWYACI TVKDFPRQAS
CKGSVGIDLG LKQSATTSNG DKLTIKQTQK WANKLAVAQR ANNKSRVKAI HAKIKNSRLD
AIHKFTTQLV KDNALIVVGD VKSRSFTNSM TNLAKSTYDA GWFELKRQLE YKCKYAGCQL
EMVNESYTTQ TCSHCLKISD SSPKGRAGLG IRGWRCAECG TWHDRDINAA KNILAVGLDR
LVVGIPSV
|
|---|
| |