| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_4400 |
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| Symbol | |
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| ID | 5211385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 5516244 |
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| End bp | 5518289 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640597980 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001278683 |
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| Protein GI | 148658478 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.118889 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAGG CAGGTCACAG CGAAACACGG CAATCCGCCG ATGCTTTGCT TCAGGCGCGT
GCTGTGAACA GCGCAGCCCA TATCCGGGTT GTTGCCGATA CTGGCGATGG CGTCGAGCAC
AAATCGGTTG CGCAGACGCT CAAACGCGAA CGACAGCTCA ATCTCCTGAC GCAACTGTTG
CACAGTGCAC ACGACATTGA GAGCATCATG CCTGAATTGA TGCGTCTGGT TGTTGACCTG
GTCGAAGCAG ACGCTGGCGC ACTCCCGCTG ATCACACCGG ACGGTGAGAA ACTGGAGTTT
CGCTACACCT TCGGGGTGCC AGAGGCATTG CAGGGGCTGC ATCTCCCCCG CAGTTCTTCG
CTTGCCTGGA AGATCATTGA CGAACGTTTG CCAGCGCTGG TGAACGGCTA TCATCGCAGC
GAGCGCGCGC TGCGCGAACT TGTTGAGCAC GATGTACGCG CCGTCGTTGG TGTGCCGGTC
GTTGCCGATG GGCGACCGAT CGGCGTCCTC GCGGTCTATC GTATCGGACG CGATGAACCA
TTTACGGTTC ACGACCTGAA CATTCTGACG GTTATTGGCA GGCAAATAGG ACTGACCATT
GAGCGCCTCC GGCACTATCA GGCAGCCATT CAGGAAGCGG AGCGCCGGGC GGCGCTGTTC
AACGCCAGTC AACAGATCGG CGCGATCCTC GATCTGCCGC ACCTCTACCG GGCTATTCAT
CAGGCGGTAG CATCGCTCAT TCCCTGCGAT TCCTTCGCGC TATCCCTGGT CGATCCTGGC
AGTGAGCGAT TGAACACTGT CTACTCCAGC AGTGACCAGC CCGATCAGGA CAACCATACC
CTGGATGATG CAGTGGCGCA GGCGATTGCT GGCGGACAAT CGCTGTGCAT CACGGGTGGC
GGTCGAGACA CGCGCCTGCT GATCGTCATG CGGCGTGGCG ACCGGATATT GGGCGTGATG
TCGGTGCACG TGCGCGCGAC CTGCGTGTAT TCAGCCAGTG ACCTTGAGAT GCTTGATCAA
GTGGCGACGA CGGCTGCTAT TGCGATTGAG AATGCGCGTC TTTTTGAAGA CGCACGGCGT
GAAGCGGACG TGCGCACCCG TCTGTACGAA GCGAGTCAAC GTCTCGGCAC CCTGTTCGAT
CTGAACCAGA TCTACGACGA GATCTATCGC GCCACGATAT CGCTGGTTCC GTGCGATGGC
TTTCTGATTG CGCTCAAGAT GGGTGAGCAG GGTCCAGCGG GGGTTATCTA CTGCGTCGGG
CGCGCATACA GCAAAGCGTG CGCCGATCTG GCGAACCGCG CAATTACGAA CCGGGAATCG
TTGCGCTGTG ACCATGATGA ATGCGGCAGC AGCGTGCTCG TTGCCGTCAT GCGGCGCGGC
GGGCGGGTCA TCGGTGCAAT TCTCGTTCGT GCGTCTCGAC CATATGCGTA TACTGACGCC
GACTGCAGCG CACTCGAACT GCTTGGGGCG ACGGCGGCGA TTGCCATCAA CAATGCGCAC
CTGTTCGCCG AAGCGCGTCG CCATGCAACC ATTGATGAAC TGACCGGCGT CTGGAATCGA
CGTACCTTCT TCGAGAATGT CAGACGCGAG TTTCAACGCA GTCAACGCAC GTTGCATCCG
CTGGCAATCC TCATGATCGA TGTTGATCAT TTCAAGTCGG TCAACGACAC CTACGGGCAC
GCAGCCGGTG ATCAGGTGTT GCGTGGCGTG GCAGAACGTT GCCGCAATCA GTTGCGCGTG
ATTGACATTA TCGGTCGCTA CGGCGGCGAA GAATTTGCGG TGGCGCTCCC TGAAACCGAC
ATCCACGCCG CCGGACAGAT CGCCGAGCGC CTGCGCATCG CCGTTGAGCG TGCTCCATTT
GTGACCGATT ACGGATCGAT TTCGCTCACG ATCAGTGTCG GCGCAGCAGT CTATCATCCC
GATGATCACG TCACGCTTGA TGCCGTCATT GATCGCGCTG ATCGGGCATT GTATATCGCC
AAGCGCAGCG GTCGCAATAG TGTTCGTGTC TGGTCATATC CGGCGACGAC GGTGACTGAC
GGATAA
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| Protein sequence | MTQAGHSETR QSADALLQAR AVNSAAHIRV VADTGDGVEH KSVAQTLKRE RQLNLLTQLL
HSAHDIESIM PELMRLVVDL VEADAGALPL ITPDGEKLEF RYTFGVPEAL QGLHLPRSSS
LAWKIIDERL PALVNGYHRS ERALRELVEH DVRAVVGVPV VADGRPIGVL AVYRIGRDEP
FTVHDLNILT VIGRQIGLTI ERLRHYQAAI QEAERRAALF NASQQIGAIL DLPHLYRAIH
QAVASLIPCD SFALSLVDPG SERLNTVYSS SDQPDQDNHT LDDAVAQAIA GGQSLCITGG
GRDTRLLIVM RRGDRILGVM SVHVRATCVY SASDLEMLDQ VATTAAIAIE NARLFEDARR
EADVRTRLYE ASQRLGTLFD LNQIYDEIYR ATISLVPCDG FLIALKMGEQ GPAGVIYCVG
RAYSKACADL ANRAITNRES LRCDHDECGS SVLVAVMRRG GRVIGAILVR ASRPYAYTDA
DCSALELLGA TAAIAINNAH LFAEARRHAT IDELTGVWNR RTFFENVRRE FQRSQRTLHP
LAILMIDVDH FKSVNDTYGH AAGDQVLRGV AERCRNQLRV IDIIGRYGGE EFAVALPETD
IHAAGQIAER LRIAVERAPF VTDYGSISLT ISVGAAVYHP DDHVTLDAVI DRADRALYIA
KRSGRNSVRV WSYPATTVTD G
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