Gene RoseRS_4400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_4400 
Symbol 
ID5211385 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp5516244 
End bp5518289 
Gene Length2046 bp 
Protein Length681 aa 
Translation table11 
GC content59% 
IMG OID640597980 
Productdiguanylate cyclase 
Protein accessionYP_001278683 
Protein GI148658478 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.118889 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCAGG CAGGTCACAG CGAAACACGG CAATCCGCCG ATGCTTTGCT TCAGGCGCGT 
GCTGTGAACA GCGCAGCCCA TATCCGGGTT GTTGCCGATA CTGGCGATGG CGTCGAGCAC
AAATCGGTTG CGCAGACGCT CAAACGCGAA CGACAGCTCA ATCTCCTGAC GCAACTGTTG
CACAGTGCAC ACGACATTGA GAGCATCATG CCTGAATTGA TGCGTCTGGT TGTTGACCTG
GTCGAAGCAG ACGCTGGCGC ACTCCCGCTG ATCACACCGG ACGGTGAGAA ACTGGAGTTT
CGCTACACCT TCGGGGTGCC AGAGGCATTG CAGGGGCTGC ATCTCCCCCG CAGTTCTTCG
CTTGCCTGGA AGATCATTGA CGAACGTTTG CCAGCGCTGG TGAACGGCTA TCATCGCAGC
GAGCGCGCGC TGCGCGAACT TGTTGAGCAC GATGTACGCG CCGTCGTTGG TGTGCCGGTC
GTTGCCGATG GGCGACCGAT CGGCGTCCTC GCGGTCTATC GTATCGGACG CGATGAACCA
TTTACGGTTC ACGACCTGAA CATTCTGACG GTTATTGGCA GGCAAATAGG ACTGACCATT
GAGCGCCTCC GGCACTATCA GGCAGCCATT CAGGAAGCGG AGCGCCGGGC GGCGCTGTTC
AACGCCAGTC AACAGATCGG CGCGATCCTC GATCTGCCGC ACCTCTACCG GGCTATTCAT
CAGGCGGTAG CATCGCTCAT TCCCTGCGAT TCCTTCGCGC TATCCCTGGT CGATCCTGGC
AGTGAGCGAT TGAACACTGT CTACTCCAGC AGTGACCAGC CCGATCAGGA CAACCATACC
CTGGATGATG CAGTGGCGCA GGCGATTGCT GGCGGACAAT CGCTGTGCAT CACGGGTGGC
GGTCGAGACA CGCGCCTGCT GATCGTCATG CGGCGTGGCG ACCGGATATT GGGCGTGATG
TCGGTGCACG TGCGCGCGAC CTGCGTGTAT TCAGCCAGTG ACCTTGAGAT GCTTGATCAA
GTGGCGACGA CGGCTGCTAT TGCGATTGAG AATGCGCGTC TTTTTGAAGA CGCACGGCGT
GAAGCGGACG TGCGCACCCG TCTGTACGAA GCGAGTCAAC GTCTCGGCAC CCTGTTCGAT
CTGAACCAGA TCTACGACGA GATCTATCGC GCCACGATAT CGCTGGTTCC GTGCGATGGC
TTTCTGATTG CGCTCAAGAT GGGTGAGCAG GGTCCAGCGG GGGTTATCTA CTGCGTCGGG
CGCGCATACA GCAAAGCGTG CGCCGATCTG GCGAACCGCG CAATTACGAA CCGGGAATCG
TTGCGCTGTG ACCATGATGA ATGCGGCAGC AGCGTGCTCG TTGCCGTCAT GCGGCGCGGC
GGGCGGGTCA TCGGTGCAAT TCTCGTTCGT GCGTCTCGAC CATATGCGTA TACTGACGCC
GACTGCAGCG CACTCGAACT GCTTGGGGCG ACGGCGGCGA TTGCCATCAA CAATGCGCAC
CTGTTCGCCG AAGCGCGTCG CCATGCAACC ATTGATGAAC TGACCGGCGT CTGGAATCGA
CGTACCTTCT TCGAGAATGT CAGACGCGAG TTTCAACGCA GTCAACGCAC GTTGCATCCG
CTGGCAATCC TCATGATCGA TGTTGATCAT TTCAAGTCGG TCAACGACAC CTACGGGCAC
GCAGCCGGTG ATCAGGTGTT GCGTGGCGTG GCAGAACGTT GCCGCAATCA GTTGCGCGTG
ATTGACATTA TCGGTCGCTA CGGCGGCGAA GAATTTGCGG TGGCGCTCCC TGAAACCGAC
ATCCACGCCG CCGGACAGAT CGCCGAGCGC CTGCGCATCG CCGTTGAGCG TGCTCCATTT
GTGACCGATT ACGGATCGAT TTCGCTCACG ATCAGTGTCG GCGCAGCAGT CTATCATCCC
GATGATCACG TCACGCTTGA TGCCGTCATT GATCGCGCTG ATCGGGCATT GTATATCGCC
AAGCGCAGCG GTCGCAATAG TGTTCGTGTC TGGTCATATC CGGCGACGAC GGTGACTGAC
GGATAA
 
Protein sequence
MTQAGHSETR QSADALLQAR AVNSAAHIRV VADTGDGVEH KSVAQTLKRE RQLNLLTQLL 
HSAHDIESIM PELMRLVVDL VEADAGALPL ITPDGEKLEF RYTFGVPEAL QGLHLPRSSS
LAWKIIDERL PALVNGYHRS ERALRELVEH DVRAVVGVPV VADGRPIGVL AVYRIGRDEP
FTVHDLNILT VIGRQIGLTI ERLRHYQAAI QEAERRAALF NASQQIGAIL DLPHLYRAIH
QAVASLIPCD SFALSLVDPG SERLNTVYSS SDQPDQDNHT LDDAVAQAIA GGQSLCITGG
GRDTRLLIVM RRGDRILGVM SVHVRATCVY SASDLEMLDQ VATTAAIAIE NARLFEDARR
EADVRTRLYE ASQRLGTLFD LNQIYDEIYR ATISLVPCDG FLIALKMGEQ GPAGVIYCVG
RAYSKACADL ANRAITNRES LRCDHDECGS SVLVAVMRRG GRVIGAILVR ASRPYAYTDA
DCSALELLGA TAAIAINNAH LFAEARRHAT IDELTGVWNR RTFFENVRRE FQRSQRTLHP
LAILMIDVDH FKSVNDTYGH AAGDQVLRGV AERCRNQLRV IDIIGRYGGE EFAVALPETD
IHAAGQIAER LRIAVERAPF VTDYGSISLT ISVGAAVYHP DDHVTLDAVI DRADRALYIA
KRSGRNSVRV WSYPATTVTD G