| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_4272 |
|---|
| Symbol | |
|---|
| ID | 5211257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 5356659 |
|---|
| End bp | 5359217 |
|---|
| Gene Length | 2559 bp |
|---|
| Protein Length | 852 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640597861 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001278565 |
|---|
| Protein GI | 148658360 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01376] Chlamydial polymorphic outer membrane protein repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.176048 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCAT CACTCAAATC GCCTGCCACG CTCTTCGTTC TTGGGGTCTT CCTGATCATG
ACCGCCGTTC TGCCAGCGCC CCGACCTGTC AGCGCCTCCA GCGTGCTCTA CGCCGCGCCG
ACTGCGACCG GCAGCGCTGA CTGTTCCTCG TGGGCGAACG CCTGCACCCT GCAAACGGCG
TTGACGAACG CCACAAGCGG CAACCAGATA TGGGTCCGGC AAGGCGTGCA TCGTCCCGGC
TCGAGCCAGA CCGACACCTT CACCCTGAAG AACGGCGTGG CGGTCTACGG CGGCTTCGCC
GGAACGGAGA CATCGCTCGC CCAGCGCGAC TGGCAGACCA ACGTCACCGT CCTCAGCGGC
GATATCAACC AGGACGACAT CACTGACGCC AATGGCGTGG TGACCAGTAC GGCGAATATC
GCAGGCGTCA ACGCCTATCA TGTCGTCACC GGCGGCGGGA CGAACAACAC CGCTGTACTG
GACGGCTTCA CCATCACTGC CGGGAATGCC AACAGTCCTT CCCCCCCCGA CGACGCTGGC
GGCGGGATGT ATAACAACAA CAGCAGCCCG ACGCTGCGCA ATCTGATCTT CAGCGGCAAT
GCTGCCAACA GCGGCGGCGG GATGGCCAAT TTTAACAGCA GCAACCCGAC CCTGACCAAT
GTCACCTTCA GCGGTAATTC TGCTGACCTC GGTGGCGGGA TGTATAACGA GAACAGCAGC
AACCCGACCC TGACCAATGT CACCTTCAGC AGTAATACTG CGCAGTCTGG CGGCGGCATG
TACAACTTTT ATAGCAGTCC CACCCTGACC AATGTCACTT TCAGCGGCAA TGCTGCACAG
GCTGGCGGCG GGATGTTTAA CAGTAACAGC AACCCGGTCC TGACCAATGT CACCTTCAGC
GGCAATACTG CGTCAGGGAT GGGCAGCAGC GGCGGCGGGA TGTTCAACTA CGACAACAGT
AGTCCCACCC TGACCAACGT CACCTTCAGC AGTAATACTG CGCAGTCTGG CGGCGGGATG
TACAACTTTT TTGATAGCAG TCCCACCCTG ACCAATGTCA TCTTCAGCGG CAATGCTGCA
CAGGCTGGCG GCGGGATGTT CAATGAGAAC AGCAGCCCGA TCCTGACGAA CGTCATTTTC
AGCGGCAATG CCGTAACAGT CAGCGGCGGC GGGATGGCCA ATTTTAACGG CAGCAACCCG
AACCTGATCA ATGTCACCTT CAGCGGCAAT ACTGCCAGCT CCGGCGGCGG GATGGCCAAT
TTTAACGGCA GCAACCCGAC TCTGACCAAC GTTATTATCT GGAACAGCGT CGGAGGCAGT
ATCATCAATA GCTCCAGCAC TCCTGACGTC ACCTACAGCA ACATTCAGGG CGGCTACTCC
GGCACAACCA ACATCAATGC CGATCCGTTC TTTGTGGACG CCGACGGTCC CGACAACATC
GTGGGCACCC TCGACGACAA CCTGCGCCTG CAATCTGGCT CACCCTCCAT CGATACCGGA
AACAACGCTG CCGTTCCCAC GGGCGTCACG ACCGACCTGG AGGGCAAGCC CCGCATTCAG
AACGGAACGG TGGATATGGG TGCGTATGAA TATGACAATA CTCCTCCCAC GGTGGTCTCT
ATCACCCGCG CCGACCCGAA CCCGACTAAT GCGGCGAGCG TGACCTTTGT CGTCACCTTC
ACCGAAGCGG TCACCGGCGT GGGCGTCGCC GACTTCGCCC TCACGCTTAC CGGCGGCGTC
AGCGGCGCGA GCGTCACCGG GGTGAGCGGG TCGGGCGCCG TCTACACCGT CACGGTGAGC
ACCGGAACCG GCGACGGCAC GCTGCGGCTG GACATTCCGA ACACCGCCAC GATCACCGAC
CTGGCGGGCA ACGCCCTGAG CGGGCTGCCG TTTACCGGCG GCCAGGTTTA CACCGTGGAC
AAAACCGCGC CCGGTGTCAC GATGACCTCA AGCGCGCCCA ATCCGACCAA CAGCGCGCCC
ATTCCGGTCA CGGTCACCTT CAGCGAGCCG GTGACCGGCT TCACCGCAGG CGACATCGCC
GTGAGCAACG GTTCGGTGAG CAACTTTGCG GGCGGCGGCG CATCCTACAC CTTCGACCTG
ACCCCCGCCG CCAACGGACT GGTCACCGCC ACGATTGCCG CGAACGTCGC CGTCGATGCA
GCGGGCAACG GCAACACTGC CGCTTCGTTC AGTCGCACCT ACGACACGAC CGCGCCCGGC
GTCGCGTCGA TCACTCGCGC CGACCCGAAC CCGACCAGTG CGGCAAGCGT GAACTTTATC
GTGACCTTCA CCGAAGCGGT CACCGGCGTG GGCGTCGCCG ACTTCGCCCT CACGGTCACC
GGCATCAGCG GCGCGAGCGT CACCGGGGTG AGCGGGTCGG GCGCTATCTA CACCGTCACG
GTGAGCACCG GAACCGGCGA CGGCACGCTG CGACTGGACA TTCCGACTGC CGCCACGATC
ACCGACCTGG CGGGCAATGC TCTGAGCGGG CTGCCGTACA CCAGTGGCGA AACCTACCAG
AAAGGCTATC GGGTATTTTT GCCGCTAATA GTAAGATAA
|
|---|
| Protein sequence | MSASLKSPAT LFVLGVFLIM TAVLPAPRPV SASSVLYAAP TATGSADCSS WANACTLQTA
LTNATSGNQI WVRQGVHRPG SSQTDTFTLK NGVAVYGGFA GTETSLAQRD WQTNVTVLSG
DINQDDITDA NGVVTSTANI AGVNAYHVVT GGGTNNTAVL DGFTITAGNA NSPSPPDDAG
GGMYNNNSSP TLRNLIFSGN AANSGGGMAN FNSSNPTLTN VTFSGNSADL GGGMYNENSS
NPTLTNVTFS SNTAQSGGGM YNFYSSPTLT NVTFSGNAAQ AGGGMFNSNS NPVLTNVTFS
GNTASGMGSS GGGMFNYDNS SPTLTNVTFS SNTAQSGGGM YNFFDSSPTL TNVIFSGNAA
QAGGGMFNEN SSPILTNVIF SGNAVTVSGG GMANFNGSNP NLINVTFSGN TASSGGGMAN
FNGSNPTLTN VIIWNSVGGS IINSSSTPDV TYSNIQGGYS GTTNINADPF FVDADGPDNI
VGTLDDNLRL QSGSPSIDTG NNAAVPTGVT TDLEGKPRIQ NGTVDMGAYE YDNTPPTVVS
ITRADPNPTN AASVTFVVTF TEAVTGVGVA DFALTLTGGV SGASVTGVSG SGAVYTVTVS
TGTGDGTLRL DIPNTATITD LAGNALSGLP FTGGQVYTVD KTAPGVTMTS SAPNPTNSAP
IPVTVTFSEP VTGFTAGDIA VSNGSVSNFA GGGASYTFDL TPAANGLVTA TIAANVAVDA
AGNGNTAASF SRTYDTTAPG VASITRADPN PTSAASVNFI VTFTEAVTGV GVADFALTVT
GISGASVTGV SGSGAIYTVT VSTGTGDGTL RLDIPTAATI TDLAGNALSG LPYTSGETYQ
KGYRVFLPLI VR
|
|---|
| |