Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_3982 |
Symbol | |
ID | 5210965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 4983254 |
End bp | 4984660 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640597573 |
Product | protein-export membrane protein SecD |
Protein accession | YP_001278279 |
Protein GI | 148658074 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.728055 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGTAGTC GAGATATTTA CTCGTTGATC TTCATTCTGC TGATTGCTGG CATTGCGCTG TCAATCGTCT TCGCCCCGGA AGGGCGCTGG TTGTTCAACC GCGACGTCAG CGTTCGCCTG GGGCTGGACT TGCGTGGCGG CATCCAGGTG CTGCTGCGCG CTGCAGAGCC GGTTGAACGC AGCGTGATGC AAACAGCAGC TGGTGTCATC GAGCGCCGTA TCAACGGTTT AGGGGTTGCC GAGTCGGTGG TTCAGCTGTC GGGGAATGAC CGGATCATCG TCGAGATACC CGGTATTGAT AACCCCGAAC AGGCGATTGA AACCCTGCGC GGCACCGGTA AACTGGAGTT CATCGACACC AAAGGCGAGT TTCTGGCGCC AGGCACGATT GTGCGCACAA CCGGCAGCCC CAATCCGGTT GCGCTGCGTC CTACCGCCAC GGTGACCGGC ACAGAGGAGA TAACGCCGAC CGTGCCGGAG GGTCCGATCT ACGAGAGCAT TACCGACGGC AAAGATCTGG ATCTGAACGC GGTGCAACCG CCGCAGATCG CCGGTCAGAG TCTGACGAAC CAGTTTGCTG TGCCGTTCGC CTTTACCGGA GAATCGGCGC GTCGTCTGGA GCAGTTCACC GCCGCCAACA TTCAGCGCCC GATGTGTATC GTGCTCGACA ATCAGGTCTT CAGTTGTCCG GTTGTTCAGG CGGCGCTGAT CGGCGGGCGC GGCGAAATTA CGACCAGCAC GCGCCAGGAC GCAGAGCAGA TCTACACCCA GCTCAAGTAT GGCGCACTGC CAGTTCCGTT GCAGGTCGAA TCGAGCCGGA CGGTCTCGGC GTCGCTTGGG CAGGGGTCGG TCGATGCCAG CATTGTGGCG GGTCTGGTCG GGTTGCTCAC AGTGGCGTTG TTCATGATCC TGTTCTATCG CCTGCCCGGT TTTCTGGCGA CTGTGGCGCT TCTGCTCTAT ACGGTGATCA GTTTTGCGCT GTATCAGTTG ATCCCGGTGA CGCTGACGCT ACCAGGTATT GCCGGTTTCA TTCTGTCGAT CGGGGTGGCG GTTGATGCGA ATGTGCTCAT TTTTGCGCGA CTGAAAGAAG AGTTGCGGCA CGGCAGATCG CTGAATGCGT CGATTGACGC TGCTTTCGTG GAAGCATGGC CCGCCATCCG CGACTCGAGC GTGGCAACGT TGATCACCTG CACCATCCTG TTCATGTTCG GCAATACCTT TGGCGTGAGC CTGATCAAGG GGTTCGCGCT GACGCTTGGG CTTGGCATTT TGCTGAGCCT GTTTACAGCG ATGGTCGTTA CGCGCACATT CCTGCATGTG ATCAACCCAT TGCCGTTTGC GCAGAACCCC TGGCTGTACG AACTGAGGGA TGCGCCGGGG ATGCGTCACG CGCGCGAGGC GGCATAA
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Protein sequence | MRSRDIYSLI FILLIAGIAL SIVFAPEGRW LFNRDVSVRL GLDLRGGIQV LLRAAEPVER SVMQTAAGVI ERRINGLGVA ESVVQLSGND RIIVEIPGID NPEQAIETLR GTGKLEFIDT KGEFLAPGTI VRTTGSPNPV ALRPTATVTG TEEITPTVPE GPIYESITDG KDLDLNAVQP PQIAGQSLTN QFAVPFAFTG ESARRLEQFT AANIQRPMCI VLDNQVFSCP VVQAALIGGR GEITTSTRQD AEQIYTQLKY GALPVPLQVE SSRTVSASLG QGSVDASIVA GLVGLLTVAL FMILFYRLPG FLATVALLLY TVISFALYQL IPVTLTLPGI AGFILSIGVA VDANVLIFAR LKEELRHGRS LNASIDAAFV EAWPAIRDSS VATLITCTIL FMFGNTFGVS LIKGFALTLG LGILLSLFTA MVVTRTFLHV INPLPFAQNP WLYELRDAPG MRHAREAA
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