Gene RoseRS_3935 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_3935 
Symbol 
ID5210918 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp4922236 
End bp4924935 
Gene Length2700 bp 
Protein Length899 aa 
Translation table11 
GC content61% 
IMG OID640597531 
ProductFHA modulated ABC efflux pump with fused ATPase and integral membrane subunits 
Protein accessionYP_001278238 
Protein GI148658033 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.410503 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCACTGT CTGCAACCTG CATCCACTGC GGTGCGCCGT TGAGCCGTCC CGGTGCAAAG 
TTTTGCACCC GCTGCGGTAA ACCGCAGGAG ACGGCCGCTC CGGTCACGTC AACATCGGCG
ATTGGGGCTT CTTCACCTGA CAGCGCCTCC CAGAAAACCC AGATATTCAC GAGCCAGGGA
TCGACGTCTG CGCCGCCTGC CTACGCTACG AGCGGCGAAG GCGCATCGCA GGGCGGCGCA
CCGCTCTCAG GACCGCTCCT GATCGTTCAG GATGTCGGAC AAACGTTCGA GGTCGCACTT
GGTCAGCAAC CGCTCTCCAT CGGGCGCGCA CCCGATAATG ATATTGTCAT CACCTCGCGG
TTCGTCTCCG GTCGTCACGC GCGGATCGAA CCGCATGGCA TCGCCCACCA GATCGTCGAT
ATTGGCAGCA CCAATGGTTT ACTCTTTGAG GGAAAGCGAC TTCCCGCCAA TACGCCACAT
GTGCTGGCTG ACAGTGATGT CCTGCGGATT GGCGATCCGG CGACCGGTAA TTTCGTCACC
CTGACCTACC GCAACCCCCA GGCGCCGAAA GTGCAGCAGG CTGCCGCCGT GGCGCGCAGT
TACCGCCTCG ACCCGACCGA CCCGCAGATT ACGATTGGTC GTGAAGGATG CGAGATTCTG
CTCGACAACC CGCAGGTGTC GCGTAAACAT GCGGTCATCG ACCGTGTGAA CGGAAAACAC
GTTCTGCGCG ATGTGGGGAG CACTAACGGC ACGTTCGTCA ACGGGCGACG CATTACCGAG
CATACACTGG TCAAAGGCGA CATCATTCAG ATCGGTGCAT TCAAACTGGT CTACACCGGT
GAAAGCCTCG ATCAGTACGA CCAGCGCGGC GCGTTGCGCA TCGACGCGCG CAACCTGTGG
CGCGAAGTGT CGCGCGACGG CAAAACCCGC ATGATTCTGA AGGATGTATC GCTTTCGATT
GCACCGCGTG AGTTCGTTGC GCTCGTCGGC GGCAGCGGCA CCGGCAAGAG CACCCTCCTC
AACGCCCTGT CCGGCTTCGT GCAGGCAACC CACGGCAGCG TCCTGGTCAA CGGCGACGAT
TACTACCGCA ATTTCGACGC CTACCGCGCG GTGCTTGGCT ACGTGCCGCA GGACGACATC
CTCCACCGCA CGCTGCCAGT CGAACGCGCG CTCGGGTACG CAGCCGAACT CCGCCTGCCC
GCCGATACAG CGCCAGCAGA AATCCGTCAG CGCATCGACC GGGTGCTCGA CGACGTCGAA
ATGACGCCGC ACCGCGAAAA ACCGATTGAA AATCTGTCGG GCGGGCAGCG CAAACGGGTC
AGTATTGGCG CCGAACTGCT GGCTGATCCT TCGCTCTTCT TCCTGGACGA ACCCACCTCC
GGTCTCGACC CCGGTCTCGA AAAGAAGATG ATGTACACCC TGCGTCGCCT GGCGGATAGC
GGTCGAACGA TTATCCTGGT GACCCACGCA ACTGCCAATA TCAATGTCTG CGACCACGTC
GCCTTCATGT CGGACGGGCG CATGGTGTTT TTCGGTCCGC CAGCCGAGGC GCTCAAGTTC
TTCGGTGTGG CAAGCGGCGA TTTTGCCGAC ATCTACACCC GCATCGACGG GCTGGCTGAC
CCGAATGACC CCGAACGGTG GGCGATTGTG CAACGCGACC TCCAGGCGGA GTATGCCGCC
TGGCAGCACC ATCATCAGCA GACATCAGGC AACAGCAAAC CGACGGTTCC GACGCTCGCG
GAATTGTGGG AAATGAAGTT CCGCGCCTCG CCGCAGTATG CCACGTATGT GACTGGACGA
CTGGCGGAGG CGCCGGCGGG TCCAGTTTCC GGCAGCGCCG GGGACGATGG CGCCACCAAA
CGACCGGGCG TCTCATCACT GCGACAATTT GGCATCCTGG TGCGCCGGTA CTTCGACCTG
ACCCTGCAAG ACCGGCGCAA TCTGGCGATC CTGCTGCTCC AGGCGCCGAT TATCGGTCTT
CTGCTGATGC TCGTCGCCAA AGCGGATGCT ATCGTTGGCG AGAACGCCTT TGCGAACGAA
GCCAAAAAGG TGCTTTTCAT GCTGGCAACA GTCGGCGTCT GGTTCGGCAT CATCAATGCT
GCGCGCGAGA TCACCAAAGA AGCGCCGATA TACCGGCGTG AACGTCTGGC AAATCTGCGC
ATCGGTCCGT ATGTCCTGTC GAAGGTGGTA GTGCTGCTCC TGCTGGTGAT TCTCCAGAGC
GCCGTGCTGC TCGCACTGGT CGGCTTGAAG GTGCAATTCC CTGAGCAGGG GGTGATGCTG
CCGATCCAGC TGGAACTGTT CATCACCGCT GTATTGACGT CGCTGGCTGG AATGGCGATG
GGGCTGGCAA TCTCGGCATT CGCGGCAACG CCGGATCGCG CGATTTCGCT GGTGCCGCTG
GCGCTCATCC CGCAGATCAT TTTTGCTGGG GTCATTTTCA GTCTTGGGGA TGGCATCACG
GTTCAGCGCG TCCTCTCGTG GTTGACGATC AGCCGCTGGG CGATGGATGC CTATGGCACC
TCGGTCAATA TCAACAGCCT GCCGCTGCAA CCGGGGATGC TGCGCCTGCC CAATCCACCA
GAGGAGTACA CCTTCACTCC AACCCATCTG CTCTCACGCT GGGGCATCCT CCTGGGCTAC
ATGGTTGTGT GTCTGGCACT CACCGCCTGG CAACTGCACC AGCGCGACCG GCAACGGTAG
 
Protein sequence
MSLSATCIHC GAPLSRPGAK FCTRCGKPQE TAAPVTSTSA IGASSPDSAS QKTQIFTSQG 
STSAPPAYAT SGEGASQGGA PLSGPLLIVQ DVGQTFEVAL GQQPLSIGRA PDNDIVITSR
FVSGRHARIE PHGIAHQIVD IGSTNGLLFE GKRLPANTPH VLADSDVLRI GDPATGNFVT
LTYRNPQAPK VQQAAAVARS YRLDPTDPQI TIGREGCEIL LDNPQVSRKH AVIDRVNGKH
VLRDVGSTNG TFVNGRRITE HTLVKGDIIQ IGAFKLVYTG ESLDQYDQRG ALRIDARNLW
REVSRDGKTR MILKDVSLSI APREFVALVG GSGTGKSTLL NALSGFVQAT HGSVLVNGDD
YYRNFDAYRA VLGYVPQDDI LHRTLPVERA LGYAAELRLP ADTAPAEIRQ RIDRVLDDVE
MTPHREKPIE NLSGGQRKRV SIGAELLADP SLFFLDEPTS GLDPGLEKKM MYTLRRLADS
GRTIILVTHA TANINVCDHV AFMSDGRMVF FGPPAEALKF FGVASGDFAD IYTRIDGLAD
PNDPERWAIV QRDLQAEYAA WQHHHQQTSG NSKPTVPTLA ELWEMKFRAS PQYATYVTGR
LAEAPAGPVS GSAGDDGATK RPGVSSLRQF GILVRRYFDL TLQDRRNLAI LLLQAPIIGL
LLMLVAKADA IVGENAFANE AKKVLFMLAT VGVWFGIINA AREITKEAPI YRRERLANLR
IGPYVLSKVV VLLLLVILQS AVLLALVGLK VQFPEQGVML PIQLELFITA VLTSLAGMAM
GLAISAFAAT PDRAISLVPL ALIPQIIFAG VIFSLGDGIT VQRVLSWLTI SRWAMDAYGT
SVNINSLPLQ PGMLRLPNPP EEYTFTPTHL LSRWGILLGY MVVCLALTAW QLHQRDRQR