| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3875 |
|---|
| Symbol | |
|---|
| ID | 5210857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 4850074 |
|---|
| End bp | 4851294 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640597470 |
|---|
| Product | putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_001278178 |
|---|
| Protein GI | 148657973 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATA ATCAACCCGG CGCAGACGTG CGCCACCTGT ACATCCATAT TCCGTTCTGT
CATCGCCGCT GTGCGTACTG TGATTTTAAC ACGTATGCGA ATATGGAAGA CCGCATGGAG
GCGTATGTGA CAGCGCTCTG CGCCGAACTG CGCTCACACG CGCCGCTGAG CCGCGCCGTC
GCTCCGCCGC TTCCGATGAC TGCCGATCTG ACCCGCGCGA TGCTGCGTCC GACGATCTTC
CTCGGCGGCG GCACACCCAG TATGCTGCCG GACGCATTGA TGGCGCGCAT ACTGTCCGCT
GCCGACGCGA TTGTGCCGCT GGACAGCGCC GAGGTGACGG TCGAATGCAA TCCGGGAACG
GTGCTGGCGC GCGATTATCT GCGCGCCCTG CGGGATCTGG GGGTGAACCG GATCAGCCTG
GGGGTTCAAA GTCTCCACGA TCCGACGTTG CGTGTGCTGG GACGCATCCA TACTGCGGCT
GAGGCGTATG CCTCGTTCAA CGATGCGCGC GCTGCCGGGT TCGAGAGTAT TAATCTGGAT
TTCATCTTCG GATTGCCGGG GCAGACGGTG GAGCAGTGGG AGGAGACGCT GCGCGAGATC
GTGACCTGGG GAGCCGATCA TTTCGCTCTC TATGCGCTGA TTCTGGAGGA GCGCACGCCA
CTCTACGCGC AGGTGATCAG TGGGCGGGTC ACGGTTCCTG ACGATGATGT CACGGCGGTG
ATGTACGAAT GCGCGCTTGA GCATTTTGCC GCTGCCGGAT ATGTGCAGTA CGAGATCAGC
AACTGGGCGC GCACCGATGA TCCGTCGTCG CCTGTGCCGA CGCACGCCTG TCACCATAAT
CTGGCATACT GGCTCAACGC CGATTATCTG GCAGCTGGCG CTGGCGCTCA CGGGCATCGC
TACCCGCAGC GGTATGTCAA CGTGATGGGG ATCGACGACT ATATTGCGCG CGTGTCCGCC
GGTGAGTCGC CGGTGGCGGA GATCACGGCG TTGACACCGC GCGATCTGGC GGCAGAGACG
ATGTTCATGG GGTTGCGGTT GAATGTTGGG GTGAGCGCGA CCCATTTTCG TGATCGCTGC
GGGGTGGAGA TGGATGCCGT GTTTGGGGCG GAACTGGCGG AACTGGCGGA ACTGGGGTTG
ATCGAGCGCG ACGAACGCGG CGTGCGCCTG ACCAGCCGCG GACGGATGAT CGGCAATCGG
GTATTTGAGC GGTTTGTGTA A
|
|---|
| Protein sequence | MSNNQPGADV RHLYIHIPFC HRRCAYCDFN TYANMEDRME AYVTALCAEL RSHAPLSRAV
APPLPMTADL TRAMLRPTIF LGGGTPSMLP DALMARILSA ADAIVPLDSA EVTVECNPGT
VLARDYLRAL RDLGVNRISL GVQSLHDPTL RVLGRIHTAA EAYASFNDAR AAGFESINLD
FIFGLPGQTV EQWEETLREI VTWGADHFAL YALILEERTP LYAQVISGRV TVPDDDVTAV
MYECALEHFA AAGYVQYEIS NWARTDDPSS PVPTHACHHN LAYWLNADYL AAGAGAHGHR
YPQRYVNVMG IDDYIARVSA GESPVAEITA LTPRDLAAET MFMGLRLNVG VSATHFRDRC
GVEMDAVFGA ELAELAELGL IERDERGVRL TSRGRMIGNR VFERFV
|
|---|
| |