| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3863 |
|---|
| Symbol | |
|---|
| ID | 5210845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 4828721 |
|---|
| End bp | 4833847 |
|---|
| Gene Length | 5127 bp |
|---|
| Protein Length | 1708 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640597458 |
|---|
| Product | laminin G, domain-containing 2 |
|---|
| Protein accession | YP_001278166 |
|---|
| Protein GI | 148657961 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3889] Predicted solute binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.389258 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGATTC AGATGTGGGT TGGCGGGATC TTTGGCGTGC TGATTGTGCT GATTGCGCTG
GCAGCGCCAT CTGCGAGTCA GGCGACGATC CCCAATCGCC AGACATGGGC GCATTCGCCG
GGAACGTGCG GACCGGCGCT GGAAGGAGCG GTGTTCGGGC GTGCCGGAGA CAACTGCGGC
GGAGGTGGCA CAACATTCGA TAGCAACAAC GTCGAAGGTC CGGTCATTCT GCGCGACATC
GCCACGGCTG CGGCACCCTG TCCCGGCATC GCCGAAGGGG CGACGTGTTA TCGCATGTGG
TATACCGGCT TCGACACCGG CGGCGTCCGG CGCATCGGAT ACGCCGTTTC GCCAGATGGA
ACAACCTGGA CGCGCGTGCC GGGAAGCGCC GGCGGTGGTG CAGTCCTCGG TCTGGGACCG
GCGGGGAACT TCGATAGCGC CGGGGTATCG TTCCCCTATG TCGTCCGCAA CGGCGCGACC
TTCGAAATGT GGTACAACGG CTTCAACGGC TCGGTCTTTA CGATTGGCTT CGCCACCTCG
ACCGATGGGC TGAACTGGAC GCGCGTGACA GGACCGTTGT CCCAGGGCGC GGTGCTGCGT
CCAACCGGCG CAGCCACGTT CGACCAGTCG ATTGTCGCTG CTCCCAGCGT GATCCGCGAT
GAATCCTCTG CGCAACTCCC CTGCGAAAAT GGACGCACCA CCGGCATCTG TTACCGCATG
TGGTATCAGG GAACCGATGC GGCGAATGTC TTTCGCATCG GGTATGCACT CTCGCCGGAT
GGCGTGAACT GGACGCGCGC CGCTGGCGGT AACGCAGTGC TCGGCACAGG CGCTGGCGGC
ACATGGGATG CCGGCAGCGT CGGCGCACCG GTGGTGGTGA AGGATGGCGC ACTGTTCCGC
ATGTGGTACA ACAGCCAGGC ATCCAACCAG AGCATCGGGC ATGTCGTCTC GACCGATGGG
GTGACGTGGG TGCGGCCTGA GCCAAACCAG GCAGTGTACC GCGGCGCTGA CGACCCCGGC
GCCCTTTCAC CCGACAACGT GTGGACGCCG TTCGTCATCA AGGAAGGCGC TTCCTTCCGC
ATGTGGTACA CCATCAGCAG CCGCCCCAAT GCCATACGCA TCGGGCATGC GACCATGACC
CCCGGAACGC TGCTGCCTGC GCCTGGATTG ACCCGTAATC TCGGCGAATA CACCCTCTCG
CTGACGACCC AGGCGATTCC GGCAGGCGGC AGTGTCTTGC TGACATTGCC GGCCAGCATT
CCATTCACCG AAGTGACAGC AGGCGCGATT GACGGCTTTG GCGCAAATGC GACATTCGCG
GCTGAAGCGA CGGCGTTGAC CGATGCTGCG GCGCAGGGGA CGGCGCGCGG CGCGCTCGTC
ATCCGGTTGC CTGACGGCGC TCCCGCTGGT CCGAAGACGA TCACCTTCAC CCTGGCAAAC
CCGCCATCGA GTGCGGCGCT GATGACCGTG CAGACTTTCG ATATACGCGA AGTGCTGGAA
TATGCAACGG TTGATCTGTC GCAGGCAACG GATGTCGGAC CGACTCCGAC GCCGACGCCC
GTTCCGCCCT CGCCCACGCC GGTGACGCCC ACCCCGACCG CCACCGAAGG TCCGACGGCG
ACGCCAACGC CCGTTCCGCC GTCTCCCACG CCGGTGACGC CCACCCCGAC CGCCACCGAA
GGTCCGACGG CGACGCCGAC AAATACGCCA CAGCCGCCAA CGGCAACCAG TACGCCAACG
GCAACCAGTA CACCCCAACC GCCGACGGCA ACCAGTACGC CGACGGCAAC GAGTGCGCCA
ACTGCGACGC CTGCACTAAC TGCCGATCCG TCGAACCGCC AACCGTGGTT GCACATTCCC
GGAACCTGCC CGGCATCTGC CCAGGGCGCA GTATTTACGA TTGCCGGGCA GAACTGCGGC
GGTGCGGGAA CGAGTTTTGA CACGTCGGAG ATCTTCCCGC CGATGGTGCT GCGCGATAAC
GCCACCCCAT CGCTGCCGTG CGAGAATGGG CGCACCAGCG GCATCTGCTA CCGCATGTGG
TACGTTGGTG TGGACGGCAG CGGCACGCGC CGTATCGGGC ATGCCCTGTC GCCGGACGGC
ATCACCTGGA CGCGCTACAT CGGCTCAGGA GTCGGCGGAA GCGTCTTCGG ACCGTCGGGC
GTTGCCGGCG ACTTCGATAG CAATGGCGTC ACGACGATGT ATGTCGTGCG TGACGGGAAT
ACGTTCCGCA TGTGGTACAG CGGCTTCAGC AACACCGGTG CGATTGAGGG CATCGGGTAT
GCAACGTCGC CGGATGGCAT CACCTGGACG CGGGTGCCGG GCACTGCCGG AACCGCTCCG
CCGAACCGCA ACGCCGTTCT CGTCGAACGC GGCGGCGCCG GTGATTTCGA TCAGGATTAC
ATTGTCGCGC CCTCCGTGCT GATCGATGAA GCAACCCCGG CCCTGCCCTG CGAAAATGGG
CGCACCAGCG GTCGCTGCTA CCGGATGTGG TACGAGGGTG TCAATAATGT TGGCGCCTAT
ACGTTCGCCA TCGGGTATGC CGTGTCGCCC GACGGGATCA ACTGGACGCG GGTGCCCGGC
AGCAGTGGCG GCGGCGCCGT CTTTGCGCGC ATCAACAACT TCACCGACTT CGACAGCAAC
AGTGTCGGCG TTCCTACCGT GATCAAGGAC GGCGCGTTCT TCCGCATGTG GTATGAGGCG
AAATCATACG CGAGGCCCGA TTTCTCGACC GGGTATGTTG TCTCAACCGA TGGCATCAAC
TGGGTGCGCC CGATACCGAA CGATCCGGTC TTCACCGGCG CCAATGATCC CGGCACATTC
TCGCCGGACG GCGTGTGGGC GGCACGGGCG CTCAAACTGG GCAGCAGTTA CCGTAAGTAT
TACACGGTCA GCACACGACC GAACGCTCAA CGCTTTGGGC TGGCGCAAAT GACCCCCGGC
GCGCCGCTTG GCTCGATTGC GCTGAATGCG TCTGGCGATC TGTATACGCT CAGTTTTACG
ACCGCATCCT TCATTCCGGC TGGCGGCAGC GTTCTGATCA CCCTCCCCCC GGAGGTCGAT
TTCGCACAGG TGACTCCTGG TGCAATCAGC GGTTTCGGTG CGGGCGCAAC GCTGGAGGCG
GACCCGGCGG CAGTCACCGA TGCGGCATCC GGCGGCGCGG CGCGCGGTGC GCTCCTCGTT
CGCCTGCCCA ACGGCGCGCC TGTGGGTCCA AAGACGGTGC AGTTCAGCCT CACCACGCCG
CCTCCTTCGA CCGCGCCGCT GCTGGTGCAG ACGTTCGATC TGCGTGAGGT GCTGGAGTAT
GGCGAGGTGA TGATGAACGG CACGCCGCCG CCTGCCACCC CAACCGCCAC GCCGCTGCCG
CCCACCAGCA CCCCGACCGC CACGCCGGTC CCGCCCACCA GCACGCCGGT CTCGCCGTCG
GCGACCGCAG GATCAACCGC CACGCCGGTC CCGCCTACCA GCACGCCGAC TGCCACGCCG
GTCCCGCCCA CCAGCACCCC GACCGCCACG CCGGTCCCGC CGTCGAACAG CGCGCTGCGC
TTCGACGGGG CGAATGATGA GGTGCGCGGC GGGCAGATCG CCGGATTGGG CGGCGCGCAG
ACCATCGAAC TCTGGGTGCG TCCGGCGACC GGCGGGCAGG ATAGCGTCAT CCTCGCCACC
ACCGATGATG TCATCGGCTG GGCGCTGGAA CTGAACGGCG GGCGCGCCAC CTGGTGGGTC
GCGTCGACCG CTGGCTGGCG CGCGGCGCAA CACCCGACGG CGCTGCTCGC CAATACCTGG
CACCACGTCG CCGTGACCTA CGACGGGACA ACCGCGCGGG TGTTCGTCAA CGGCGCCCCC
GGACCGGCGG CGACCATCGG CGCGATCACC CAGGGACCGT CCTTCCGCAT CGGCGGCTTT
CCCGGCTACG GCTTCTTCAA CGGCGATGTC GATGATGTGC GCATCTCGAA TATCGTGCGC
TACACCAGCA CGTTTACGCC GCCATCAGCA GCACACCCGA CGGACGCAAA TACGCGCGCG
CTTTATCGGT TGGACGAAGG GAGCGGGCAG ACAACGGCGG ACGCTTCCGG GAATGGCTAC
AACCTGACGC TCGGCACAAC GGCGAATGCT GACAGCGCCG ACCCGCAGTG GGTGGCGTCG
ACCGCGCCGA TTGCGCCGCC GCCGACGGCA ACGCCAACGG CAGTCCCGCC CACCAGCACC
CCAACCGCCA CGCCAGCGCC GCCCACCAAT ACGCCAACCG CCACGCCGGT CCCGCCCACC
AGCACGCCGG TCCCGCCGTC GGCGACCACG GAACCAACCG CCACGCCGCT TCCGCCGACC
AGTACGCCGA CCGCAGGACC AACCGCCACG CCAGCGCCGC CCACCAGTAC GCCGACCGCC
ACGCCGGTCC CGCCCACCAG CACGCCGACT GCCACGCCGG TCCCGCCCAC CAGTACACCG
ACTGCCACGC CGGTCCCGCC CACCAGCACC CCGACCGCCA CGCCGGTCCC GCCGTCGAAC
AGCGCGCTGC GCTTTGACGG GGCGAATGAT GAGGTGCGCG GCGGGCAGAT CGCCGGATTG
GGCGGCGCGC AGACCATCGA ACTCTGGGTG CGCCCGACGA CCGGCGGGCA GGATAGCGTC
ATCCTCGCCA CCACCGATGA TGTCATCGGC TGGGCGCTGG AACTGAACGG CGGGCGCGCC
ACCTGGTGGG TCGCCTCGAC CGCTGGCTGG CGCGCGGCGC AACACCCGAC GGCGCTGCTC
GCCAATACCT GGCACCACGT CGCCGTGACC TACGACGGGA CAACCGCGCG GGTGTTCGTC
AACGGCGCCC CCGGACCGGC GGCGACCATC GGCGCGATCA CCCAGGGACC GTCCTTCCGC
ATCGGCGGCT TTCCCGGCTA CGGCTTCTTC AACGGCGATG TCGATGATGT GCGCATCTCG
AATATCGTGC GCTACACCAG CACGTTTACG CCACCGTCGT CTACAAGCCT GACGACTGAC
GCAAATACGC GCGCGTTCTA CCGCTTCAAC GAGGGGAGCG GGCAGACCAC GGTTGATGCT
TCCGGGAATG GCTACAACCT GACGCTTGGC ACGACGGCGA ACGCCGACAG CGCCGATCCG
ACGTGGGTGG CGTCAACCGC GCCATAA
|
|---|
| Protein sequence | MRIQMWVGGI FGVLIVLIAL AAPSASQATI PNRQTWAHSP GTCGPALEGA VFGRAGDNCG
GGGTTFDSNN VEGPVILRDI ATAAAPCPGI AEGATCYRMW YTGFDTGGVR RIGYAVSPDG
TTWTRVPGSA GGGAVLGLGP AGNFDSAGVS FPYVVRNGAT FEMWYNGFNG SVFTIGFATS
TDGLNWTRVT GPLSQGAVLR PTGAATFDQS IVAAPSVIRD ESSAQLPCEN GRTTGICYRM
WYQGTDAANV FRIGYALSPD GVNWTRAAGG NAVLGTGAGG TWDAGSVGAP VVVKDGALFR
MWYNSQASNQ SIGHVVSTDG VTWVRPEPNQ AVYRGADDPG ALSPDNVWTP FVIKEGASFR
MWYTISSRPN AIRIGHATMT PGTLLPAPGL TRNLGEYTLS LTTQAIPAGG SVLLTLPASI
PFTEVTAGAI DGFGANATFA AEATALTDAA AQGTARGALV IRLPDGAPAG PKTITFTLAN
PPSSAALMTV QTFDIREVLE YATVDLSQAT DVGPTPTPTP VPPSPTPVTP TPTATEGPTA
TPTPVPPSPT PVTPTPTATE GPTATPTNTP QPPTATSTPT ATSTPQPPTA TSTPTATSAP
TATPALTADP SNRQPWLHIP GTCPASAQGA VFTIAGQNCG GAGTSFDTSE IFPPMVLRDN
ATPSLPCENG RTSGICYRMW YVGVDGSGTR RIGHALSPDG ITWTRYIGSG VGGSVFGPSG
VAGDFDSNGV TTMYVVRDGN TFRMWYSGFS NTGAIEGIGY ATSPDGITWT RVPGTAGTAP
PNRNAVLVER GGAGDFDQDY IVAPSVLIDE ATPALPCENG RTSGRCYRMW YEGVNNVGAY
TFAIGYAVSP DGINWTRVPG SSGGGAVFAR INNFTDFDSN SVGVPTVIKD GAFFRMWYEA
KSYARPDFST GYVVSTDGIN WVRPIPNDPV FTGANDPGTF SPDGVWAARA LKLGSSYRKY
YTVSTRPNAQ RFGLAQMTPG APLGSIALNA SGDLYTLSFT TASFIPAGGS VLITLPPEVD
FAQVTPGAIS GFGAGATLEA DPAAVTDAAS GGAARGALLV RLPNGAPVGP KTVQFSLTTP
PPSTAPLLVQ TFDLREVLEY GEVMMNGTPP PATPTATPLP PTSTPTATPV PPTSTPVSPS
ATAGSTATPV PPTSTPTATP VPPTSTPTAT PVPPSNSALR FDGANDEVRG GQIAGLGGAQ
TIELWVRPAT GGQDSVILAT TDDVIGWALE LNGGRATWWV ASTAGWRAAQ HPTALLANTW
HHVAVTYDGT TARVFVNGAP GPAATIGAIT QGPSFRIGGF PGYGFFNGDV DDVRISNIVR
YTSTFTPPSA AHPTDANTRA LYRLDEGSGQ TTADASGNGY NLTLGTTANA DSADPQWVAS
TAPIAPPPTA TPTAVPPTST PTATPAPPTN TPTATPVPPT STPVPPSATT EPTATPLPPT
STPTAGPTAT PAPPTSTPTA TPVPPTSTPT ATPVPPTSTP TATPVPPTST PTATPVPPSN
SALRFDGAND EVRGGQIAGL GGAQTIELWV RPTTGGQDSV ILATTDDVIG WALELNGGRA
TWWVASTAGW RAAQHPTALL ANTWHHVAVT YDGTTARVFV NGAPGPAATI GAITQGPSFR
IGGFPGYGFF NGDVDDVRIS NIVRYTSTFT PPSSTSLTTD ANTRAFYRFN EGSGQTTVDA
SGNGYNLTLG TTANADSADP TWVASTAP
|
|---|
| |