| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3705 |
|---|
| Symbol | |
|---|
| ID | 5210684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 4633732 |
|---|
| End bp | 4635744 |
|---|
| Gene Length | 2013 bp |
|---|
| Protein Length | 670 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640597298 |
|---|
| Product | excinuclease ABC subunit B |
|---|
| Protein accession | YP_001278009 |
|---|
| Protein GI | 148657804 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
|---|
| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0318232 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTTC GTATTGAAGC GCCCTTCCAG CCAGCGGGCG ATCAACCCAA AGCGATTGCT
CAACTGGTTG CGGGGATCCG CGCCGGATAC AAGCATCAGA CGCTGCTCGG CGCAACCGGC
ACCGGTAAAA CGCTGACTAT GGCGCATGTC TTCAGCCAGC TTGAACGACC GGCGCTGGTC
ATGGCGCACA ACAAGACGCT GGTCAGCCAG TTGTACGCCG AGTTTCGCGA ACTGCTGCCC
GATGCAGCGG TTGAGATGTT TATTTCCTAC TACGACATCT ACACGCCTGA AGCGTATGTG
CCCAGCAAAG ACCTGTACAT CGAAAAGGAA GCCGAGATCA ACGAAGAGAT CGACCGGCTA
CGCCACGCTG CCACCCAGGC GCTCTTCACC CGGCGCGATG TTCTGATCGT CGCGTCGGTG
TCGGCGATCT ACGGTCTCGG TTCGCCCCAC GAGTATGGGC AGGTCGTCAT TCCAATCCGC
GTCGGCGAGG TGCGCAACCG CGACAAACTG CTGCGCCAGT TGCTCGACCT GCAATTCGAG
CGCAACGATG TGGATTTTCA CCGGGGTACG TTCCGTGTGC GCGGCGATAC GCTCGACATC
TTTCCCGCCA ACCAGGAGAT TGCGCTGCGG GTTGAGTTCT GGGGCGATGA AGTCGAGCGC
ATTACCGAGT TCGATCCGCT GACCGGCGAA GTGCTGCTCA ATCGGACGGC GGTAGACATC
TACCCGGCGA AACACTTCAT CACAACCGCC GAAACGCTCA AACTTGCCAT CGCCGACATT
CAGGCGGAAC TGGAAGCGCG TGTCGCCGAA CTTGAACAGC AGGGCAAGTT TCTTGAAGCG
GCGCGTCTCA AACAGCGCAC CAACTACGAT CTCGAAATGC TCTCCGAGGT CGGGTACTGC
TCCGGCATCG AGAACTACTC GCGCCACCTC GACCGCCGCG CAGCCGGGCA AACACCCTGG
ACGTTGCTCG ACTACTTCCC CGACGACTTC ATCCTGTTCG TTGACGAGTC ACACATCACG
TTGCCGCAGA TCCGCGGCAT GTACGCTGGC GACCGGTCAC GCAAAGAAAC ACTTGTCGAA
TACGGGTTCC GCCTGCCATC GGCGCTCGAC AACCGTCCGC TGCGGTTCGA TGAGTTCGAG
CGGCATATTC ACCAGGCGAT CTACGTTTCG GCGACACCGG GACCCTACGA GTACGAACAC
TCGGCGCAGA TCGTCGAACA GATCATCCGC CCGACGGGAT TGCTCGACCC GATTGTCGAA
GTGCGTCCGA CCAGAGGGCA GATCGACGAC CTGGTAGGGG AGATCAAGCG ACGGGTGCAG
AAAGGACAGC GCGCGCTGGT CACGACGCTG ACCAAGCGGA TGGCGGAAGA CCTGGCGGAT
TATCTCAAGG AGATGGGCAT CCGCACCAGC TACCTGCACT CCGATATCGA GACGCTGGAG
CGGGTCGAGA TCCTGCGCGA TCTCCGACTC GGCGTGTACG ATGTGGTGGT CGGCATCAAC
CTGCTGCGTG AAGGGCTTGA TCTCCCGGAA GTATCGCTGG TCGCCATTCT CGACGCCGAC
AAAGAAGGGT ATCTGCGCAG CGGCTCTTCG CTGATCCAGA TCATCGGGCG CGCAGCGCGG
CATATCGAGG GAACCGTGAT CATGTACGCC GACACGATCA CGCAATCGAT GCGCACCGCG
ATTGATGAAA CCAACCGGCG ACGCGCCATT CAGGAAGCGT ACAACCGCGA ACACAACATC
ACCCCCGTCG GCATCTCCAA AGCCGTGCGC GACCTGACCG ACCGGGTGCG CAAGGTTGCC
GAGGAGCGCG GCGTCTATCA GGTCGCCGAA GCGCCAGCAG AACTACCGAT CCCGAAGGAT
GAGATCGTCA AACTGATCAA GGAACTGGAG AAGCAGATGA AGCAGGCGGC GAAAGACCTG
GCATTCGAGA AGGCGGCCGC ACTGCGGGAT CAGATCGTCG AACTGCGGCG CACCCTGGCG
CTCGAAGAGG AATCGCAACC GCTGCGATCA TAA
|
|---|
| Protein sequence | MSFRIEAPFQ PAGDQPKAIA QLVAGIRAGY KHQTLLGATG TGKTLTMAHV FSQLERPALV
MAHNKTLVSQ LYAEFRELLP DAAVEMFISY YDIYTPEAYV PSKDLYIEKE AEINEEIDRL
RHAATQALFT RRDVLIVASV SAIYGLGSPH EYGQVVIPIR VGEVRNRDKL LRQLLDLQFE
RNDVDFHRGT FRVRGDTLDI FPANQEIALR VEFWGDEVER ITEFDPLTGE VLLNRTAVDI
YPAKHFITTA ETLKLAIADI QAELEARVAE LEQQGKFLEA ARLKQRTNYD LEMLSEVGYC
SGIENYSRHL DRRAAGQTPW TLLDYFPDDF ILFVDESHIT LPQIRGMYAG DRSRKETLVE
YGFRLPSALD NRPLRFDEFE RHIHQAIYVS ATPGPYEYEH SAQIVEQIIR PTGLLDPIVE
VRPTRGQIDD LVGEIKRRVQ KGQRALVTTL TKRMAEDLAD YLKEMGIRTS YLHSDIETLE
RVEILRDLRL GVYDVVVGIN LLREGLDLPE VSLVAILDAD KEGYLRSGSS LIQIIGRAAR
HIEGTVIMYA DTITQSMRTA IDETNRRRAI QEAYNREHNI TPVGISKAVR DLTDRVRKVA
EERGVYQVAE APAELPIPKD EIVKLIKELE KQMKQAAKDL AFEKAAALRD QIVELRRTLA
LEEESQPLRS
|
|---|
| |