| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3670 |
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| Symbol | |
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| ID | 5210649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 4594743 |
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| End bp | 4599410 |
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| Gene Length | 4668 bp |
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| Protein Length | 1555 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640597264 |
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| Product | cold-shock protein, DNA-binding |
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| Protein accession | YP_001277975 |
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| Protein GI | 148657770 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0651926 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00853504 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCTCTCGC AGATAATCCA ACGTCAGATT CCAATAGGTA GCACTGTTAT CTTTTCCCTG
AAGGATGGGC AAGATGTAAG CGGAATCCTG GTAGAAATCG GACGCGACCA CGTCACCCTG
GAAAATGCCG GATATTCGGT GACCATCCTG CTAGAAATGA TCGGTACCTG GCGCGTTTCC
AGGAGCCTAG AGCCACTGGA GCACACACCG ATGCCAGAGC CGTCATCCGC TTCTCCACCT
CCATTATCAC CTCCAGACCT TGCCGATCAG GAAACCATCA AGAGACTCCT GGAAATTGAA
GCACGCTTTC AGGTCAGGCA ACAGGTTTCT TTCATTCAGA TAAAGGTGCC AGATTTTGTT
TTTCCGGCGA ATGAGATGCA GGGTAAGCAA AGCGCTAATG CACTGACAAT CTGGAATCGC
GTTAAGAACA AGTACGAATA CGCAGAAAAA ATAAATGAAC TGAGCGCTAA ATTTGGTAGA
ATACAGTCTT TAGTAGGAGA GCTTGCTTCT CTATCAGAGC AATTTCCGCG TTCTTCTTCC
GTGAAGCGGC ACCTTGCGTA TTTTTATCAC CTTGCGGGCG ATAACCAAAA GTCTCTGGCT
TTGTATCAGG AATCAGCTTC CATTTCAAAT AATGCCCTGG ATTGGTATAA CCTGGCAGCG
AAGGCATTAG CAAAGGGCGA TGAAGCGCTG GCTTGTTACT GTTTTGGGAA TTTCTTCAAA
GTGAATCCCA TCACAGATGA ATTGGACACC TGGTATATCT ACGCTGGCCT GATCAGGAAA
TTCTCCGACT ATCAAACAAT TAAAGAGATA GCCAGAAAAA GAGTAAAGAT TGCATCGAAG
GACGAGATTG TTTTGCTATT GGAGACAGGG ATCTACCTCT TAACTGCCAC TGGACGCGGA
CAGATCGCCA CGAATACTGT CCAACGCTGG ATAAAAGACC ATGCTCTCGA AGATTTAGTG
ATCGAGGTTT TTGACCATTT TCAAGAGCAA AAGGATGCAG CATACCATGA AAGAGTATCA
GGTTTTTTAG AGGAAAAATC ACCTGAATCT GTCCAAATGA GTCTCGATAA TCCACAAGGT
TTTATTTTCT CATACAGGAG GGACCGTAAC TTTGGTTTTC TCGAAGGTAA AGATGGAAGA
AATTACTTTT TCCATATCAC TGCTGTATCT GATGACGACT TGCTTGCACA ACTTCGTGAT
TTCACATCTG GCAAAAGGAT ACCGGTGATC TTCGAATCAA GTGAGGGACA GAAGGGTCCT
ATCGCGGTAA GGGTTGCGCT GTACCGTACT CTTGAAGAGA TGTTTGCAAA GGCTGTTGAG
TATGCCAATG ATGGTGACTA TTCGAAAGCG ATTGCTTTTG TAAAGAAGGT ACTGGATGCC
AGACCCAATT TTCCATCTGC ACAGGATTCC TATGAAAAGT GGCGTGAGTA TGCCAGAGTT
AGTGGTATTC CCAAAGGCTC AAATCCCTAT GCGCGAGCCA AGCGTGTTCA ACTAGTTGAG
AAAGATCTTG AGCGAGCAGC CCAGCTGCTT CGTGATGCCA TCAGGCAAGG CGATAATGTC
GAAAGTGCTG TCAAAGACCT GGCAGCATTG CTGGTTCAAC TGGGGAGACC AGATGAAGCC
ATTCAAGTGC TGGAAAAAAA CAGGAGTCGT ATTTCCAACC AGCAGTCTGT GGATAATATG
CTGATCAACT TTTATCAAAA TGCTGGTCAA CACGATAAAG CGATTTCACT ACTTCACAAG
CAGCTCCAGC AAGCCAACAC AGAAACCAAA AAAGCACAGA TTCTATGGCA GATTGCAATA
GGATACCTCA GAAAAGAAGA CTATGTTCGA GCCGAGCAGA CTTTCCAGGA ATTGCGACGA
GCGCAGCCTG ACAACAAGTC CATACAAAGA AATATCGCTC TCTGTCTTTT TAAACAAGAA
CGTTATGAAG AGGCACGGAA AATACTGGAT GGTATTTTAT TAACTACACC TGACCCCCAA
GCGGCAGAGT TGCTGGAAGC AATTAGACAA GCACAGGTTG GTCAGGTGAT TTCTATAAAT
GAAATAATTG TTGAGACAGC ATTATCAGAC ATTCCTAGAG AAATTAGCGG ATTTGCCAGG
TTTTACCTGG ATCGCTGTGA TTATCAGGGG GTTCGAGCGG ATCACATCCA GACAAAGAGT
TTTGATCGCA GTGATATTTC GACTCTAGAA CAGTTAGCTA CACGTTCTCG AACTATTCGT
CCGCGCGAAC GCGCTAGTTA TTACCTATCT GCAGCCAAAA TAACTTCTTT GCTAGAAGAT
GAGGATCCGA ATCAGTTTTA TAAGTATCTT TGTCGTAGTT TCGCTTCGTC TGGCGACGCG
ATCGTTGTTG AAAACAGGCC ATTAGATGCA GCGCGAGAGT ATTACTGTGA AGCGCTAAGT
GTATATGACG GAGATCGAAG CCGAAGCAGA GATGAACAGG ATGCAGTCAA TGCCTTGGTC
AGATTTTTGT TTTCAACAAT GGGACAATCA CAAATCCCTA TTAAACCAAG TATCCCCACT
ATTGATGAAA CTCTGGAATT TGTTCTAACA CGTCATCCTG ATCGCAATAA AGCCTTCGAT
GCAATTGCCT ATCTCGTTTT TCGTAGCCGG TACGCGGCTA ATCGTTTGCT CAACCGAATC
TACGACAAGT CGTCTCTACA AGCAATGGCA TTAGAGTATT TGAAGTCGGC AGGTGTATCT
ATCGGTATAG TAAAGCGCTT TGATGACTTT TTCAGGCTGT GGAACGGTTT GGTCAGGAAA
ATACTAGACG AAAACCGCTC TCTATTGAAC GAATTTCGTA TACTGAATCG AGTTGAACTT
ACTACTGCCT CCCTCGAACA TGGAGTGGAA AGAATAAAGA AAATTACTGG AAGGTTATTC
TTCGAACTCG ATCGGCAAAG AGTGATACAA ATTCAAAAGG TATTGGAAAC TGCTCTTGAG
TTGTGTAATC AGAACGCTTT TGAAGAAAAG GAGCGACTTT GTATTCAAAT TGAGAATCGT
TGCCAGGACC TGCTCAACGA GATTGAGATA AGCCCCACAA AGATTTCAGT AGAGGACATG
TACCCTCTTG TTAAAGGCAT TCAGAGCAAG ATAAACGCCT ATTTGACACA ACTATATGAA
ACATCAACAC CACAGTTAAC CATACGATTG CCTCTTGAAA CTTACATGCC CGGAAATAAC
CGATTAATAG AGGCACAGGT TGGGATTAGC AACCGAGTGG GATGTAGCCC GGCCGAGGCA
GTAGAACTGG TTATTCAGCA GTATGAAGAG ACCTCTGCTA TTAGGTTAGA AGGGTCTTTA
CGCGGTGGCG AACAGCGCAT ATTGAAAGTC CCTGTTCAAC TCAGTGAAGA AGCTCTGTCC
GCTCAGGCAT TTTCGCTGCC CATCTACGCT CGTTACCGTA CACGGTCAGG AGAAACTCAG
CAGACGCCAG TTAACAACTT CTCGATTCGA TTGAGCGCAG AATTTGAAGA AATCGAGAAC
CCCTATACCC CATATGCAGA GGGTGGTATT GTGGGTGAGT CTGCGATGTT TTATGGGCGT
GATGAACTAA TCGCCAATGT GTCAAATGCA TTGGATACAT CCAGGGCGCA GAGCAAGTGC
GTTGTGATAT ATGGTCAAAA GCGCGCCGGC AAGTCATCTA TTCTTTATCA TTTGCAGGAA
AAGTTAAAAT TAAAGGAAGA TCTGCTCGTT GTGAATATAG GTAATATCGG GGGAATTCTC
GATGAATTCT CGCGTATTCC CTTCTTGTAT CATATTCTTT GGACTATTCT AAGTAAACTA
AGGGATTCTC TTGAAGATAA GCTGAGTGAG GGTAGAAGCT CGCCGGATGT ATCGTTTCCT
TCTGGTATGG AGTTTTATCA ACATCAAAGT CCCCTATTGT TGTTTAGGGA GACTTTTGAC
CGTTTCCATC GATCGATTGA AAAACTTCCT GACTGGCGGG GTACGCGGGT TATTCTTTTG
ATAGATGAGT TCTCGTACAT TTATGGATAT ATCTTGAAGG GTATGATCCC AGAAACGTTC
ATGAAAAACT GGAAGGCAAT GTTGCAAGAC AACTTCTTTA ACGCCGTTCT GGTCGGACAG
GACGTCATGC CTAAGTTTAA GCAACGTTTT CCGAATGAAT TTGGGACAAC TCAGGACGAG
AGAGTGACCT ATCTCAGGCG AGAGGACGCT ATCAGACTGA TTGATGAACC AATTAGGATT
GGTGGGCGCC ATGGAGAGAG TCGTTATCGT GAAAGAGCCA TTGAGCGAAT CTTGGAGTTA
ACCGCAGGAA GCCCTTTTTA TATCCAGATA TTATGCAATC GTCTCGTTGA GTATATGAAC
CGCAAGCGTG CCAGTCTTGT GACAGAAGCT GATGTCGAAC AGGTAAAAGA TGAACTGATA
AGAGGTGTAA ATGCTCTCGG TAAAGATAAG TTCGATAATT TGATCAATTC GGGTGATACA
TCACAAGATG CAATCAGCGA TGAAGATGCG TTAAAGGTGC TTACTGCGAT TGCCGAGAAC
AGTCGCACCG GTCCCTGCAG TCGCAGCAGT ATTGCCTGTG AGACCAGTAT ACCCGTCGAC
GAGATTCTTG AAGACCTTGT CAGGCGTGAT GTGATAGAAC GTGAGCGGGG TCACTACTAC
TCCATTCGTG TCGGATTGTT CAGAGAATGG CTGCTTGCTC ATAGTTGA
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| Protein sequence | MLSQIIQRQI PIGSTVIFSL KDGQDVSGIL VEIGRDHVTL ENAGYSVTIL LEMIGTWRVS
RSLEPLEHTP MPEPSSASPP PLSPPDLADQ ETIKRLLEIE ARFQVRQQVS FIQIKVPDFV
FPANEMQGKQ SANALTIWNR VKNKYEYAEK INELSAKFGR IQSLVGELAS LSEQFPRSSS
VKRHLAYFYH LAGDNQKSLA LYQESASISN NALDWYNLAA KALAKGDEAL ACYCFGNFFK
VNPITDELDT WYIYAGLIRK FSDYQTIKEI ARKRVKIASK DEIVLLLETG IYLLTATGRG
QIATNTVQRW IKDHALEDLV IEVFDHFQEQ KDAAYHERVS GFLEEKSPES VQMSLDNPQG
FIFSYRRDRN FGFLEGKDGR NYFFHITAVS DDDLLAQLRD FTSGKRIPVI FESSEGQKGP
IAVRVALYRT LEEMFAKAVE YANDGDYSKA IAFVKKVLDA RPNFPSAQDS YEKWREYARV
SGIPKGSNPY ARAKRVQLVE KDLERAAQLL RDAIRQGDNV ESAVKDLAAL LVQLGRPDEA
IQVLEKNRSR ISNQQSVDNM LINFYQNAGQ HDKAISLLHK QLQQANTETK KAQILWQIAI
GYLRKEDYVR AEQTFQELRR AQPDNKSIQR NIALCLFKQE RYEEARKILD GILLTTPDPQ
AAELLEAIRQ AQVGQVISIN EIIVETALSD IPREISGFAR FYLDRCDYQG VRADHIQTKS
FDRSDISTLE QLATRSRTIR PRERASYYLS AAKITSLLED EDPNQFYKYL CRSFASSGDA
IVVENRPLDA AREYYCEALS VYDGDRSRSR DEQDAVNALV RFLFSTMGQS QIPIKPSIPT
IDETLEFVLT RHPDRNKAFD AIAYLVFRSR YAANRLLNRI YDKSSLQAMA LEYLKSAGVS
IGIVKRFDDF FRLWNGLVRK ILDENRSLLN EFRILNRVEL TTASLEHGVE RIKKITGRLF
FELDRQRVIQ IQKVLETALE LCNQNAFEEK ERLCIQIENR CQDLLNEIEI SPTKISVEDM
YPLVKGIQSK INAYLTQLYE TSTPQLTIRL PLETYMPGNN RLIEAQVGIS NRVGCSPAEA
VELVIQQYEE TSAIRLEGSL RGGEQRILKV PVQLSEEALS AQAFSLPIYA RYRTRSGETQ
QTPVNNFSIR LSAEFEEIEN PYTPYAEGGI VGESAMFYGR DELIANVSNA LDTSRAQSKC
VVIYGQKRAG KSSILYHLQE KLKLKEDLLV VNIGNIGGIL DEFSRIPFLY HILWTILSKL
RDSLEDKLSE GRSSPDVSFP SGMEFYQHQS PLLLFRETFD RFHRSIEKLP DWRGTRVILL
IDEFSYIYGY ILKGMIPETF MKNWKAMLQD NFFNAVLVGQ DVMPKFKQRF PNEFGTTQDE
RVTYLRREDA IRLIDEPIRI GGRHGESRYR ERAIERILEL TAGSPFYIQI LCNRLVEYMN
RKRASLVTEA DVEQVKDELI RGVNALGKDK FDNLINSGDT SQDAISDEDA LKVLTAIAEN
SRTGPCSRSS IACETSIPVD EILEDLVRRD VIERERGHYY SIRVGLFREW LLAHS
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