| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3157 |
|---|
| Symbol | |
|---|
| ID | 5210127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 3976596 |
|---|
| End bp | 3977633 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640596748 |
|---|
| Product | RpoD family RNA polymerase sigma factor |
|---|
| Protein accession | YP_001277468 |
|---|
| Protein GI | 148657263 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAGG TCCAAACCCG CGCCAACGAC CAGCATCGTG TTGAAGACGA TCCCGGTGCT
GAGGAGATCG ACTCTTTCTG GCTGACCGAT ATCAGCGATC TGGATGAAAA ACGCCTCTCC
CGCAGTGAAA CCATCGATGA CTCAACACAA ATGTATCTGC GTGAGATCGG GCAGGTCAGC
CTGCTGAGCG CCGAAGAGGA GATCACGCTG GCGAACGACA TTCGCGCCGG TCGAGAGGCT
CAGGAGCGAT TGAAATCGCA TCGCTTCGAA TCGCTCGCCG AGCGCCTGCT GCTTGAACGG
CGCGTGATGC AGGCTGAAGA AGCGCGGCGA CGCCTCATTC AGGCAAATCT GCGTCTGGTC
GTCAGCATTG CCAAAAAGTA CATTGGCGGA CCGCTCTCCT TCATGGACCT GGTGCAGGAA
GGGAATATCG GTCTGATGCG CGCGGTTGAG AAGTTCGATG CTGGCAAAGG TAATCGCTTT
TCGACGTATG CAACCTGGTG GATTCGTCAG GCGATTACAC GCGCTATTGC CGAGCAGAGT
CGCCTGATCC GGTTGCCGGT GCACTTGAGT GATGTCATTG CACAGTTACG TCGTGTTGCC
CGACGGCTTG AGCAGTCGCT GGAGCGCGAA CCAACCGTCG AAGAGATCGC TGCGGCTATC
GATATGCCGG AGCACAAGGT CAAACTCCTG TTGCAGGCGT CGGCGCAACC GATTTCGCTG
GAACAACCGA TCACCAGTGA TGGGGAAGGG CAGATCAGTG AGTTGCTGGC TGACGACGAT
GCCGATGCGC CTATGGAAAT CGCAACCCGG CGCATGCTCC AGCATGACCT GGCGCAGGCG
CTGATGGAAC TGCCCGACCG CGAGCGAGCT GTGCTCCAGT TGCGGTATGG CTTGACCGAC
GGACGCCGCC GCACGCTGGA GGAGGTCGGA TCCGCCTTTG GCATCACCCG CGAGCGCACC
CGACAGATCG AGGCTGATGC GTTGCGTCAG TTGCGTCGTC CTGGCATTGG TGCACGGTTG
CAGGCGTATC TGGAGTAG
|
|---|
| Protein sequence | MNQVQTRAND QHRVEDDPGA EEIDSFWLTD ISDLDEKRLS RSETIDDSTQ MYLREIGQVS
LLSAEEEITL ANDIRAGREA QERLKSHRFE SLAERLLLER RVMQAEEARR RLIQANLRLV
VSIAKKYIGG PLSFMDLVQE GNIGLMRAVE KFDAGKGNRF STYATWWIRQ AITRAIAEQS
RLIRLPVHLS DVIAQLRRVA RRLEQSLERE PTVEEIAAAI DMPEHKVKLL LQASAQPISL
EQPITSDGEG QISELLADDD ADAPMEIATR RMLQHDLAQA LMELPDRERA VLQLRYGLTD
GRRRTLEEVG SAFGITRERT RQIEADALRQ LRRPGIGARL QAYLE
|
|---|
| |