Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_3055 |
Symbol | |
ID | 5210023 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 3837147 |
End bp | 3838109 |
Gene Length | 963 bp |
Protein Length | 320 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640596647 |
Product | inner-membrane translocator |
Protein accession | YP_001277369 |
Protein GI | 148657164 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000100154 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00643024 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAACGCC TGACGATCTC CCCGCCGCTC GCTGCCGTGC TGCTGGCGAT TGTGTTGTTC CTGCTCAGTG GATTCCTGCC CAACGGTTTT GGCGGCAATC TCGATGTGGC TGCTGCACAG GCGGTTAATA TCGTGCGCCT CTCGGTCTTT CTGGGGATCA TCGCGGCAGG ACAGACTCTG GTGATTATCA GCGGCAACGA GGGGATCGAT CTCTCCACAG GCGCGGTGGT GACACTGACG GCCATTCTGA CCTATACAAT CGTCAACGGC AGGAACGAAC AGGTGCTGCC GGCGCTCCTG GCGGTGCTGA TTGTTGGGGG GATGATCGGG TTGATCAACG GCGCCGGTGT GGCGTTTCTC AACATTGCGC CGCTGGTGAT GACCCTCGGC ATGGCGGGTG TTGTCAGCGG ATTGATCCTG GTCATTACCC AGGGGAATGT CAGCGGCGCG GTTGCGCCGA TCATGACCCA ACTGATCGCC CGTCCGGTGT TTCAGGGCAT TCCCGGCGCC ATTCTGATCT GGATCGTTTT TGCGGCGTTG ATGTGGCTCC TGATCGAGCG CACAACCTAT GGCAGACATC TCTTCGCCAT CGGCACGAAT CGGACTACGG CGCGGCTCTC CGGCATTCGC GTCACCGCCG TGGTCATCGG AACCTATGCC CTCTCCGGGA TGCTCGCCGG GCTTGGCGGC TTTCTGGTAG TCGGGAATAC CGGCGTTGTC CACATTCGTA TTGGCGATCC CTTTCTCTTT CCTTCGATTG CGGCGGTCGC CGTCGGCGGC ACATTGCTGA CCGGCGGCAA GGGAAGTTAC TTCGGCACAA TGGCGGGGGC GCTGGTGCTG ACCCTGATCA CCAGCCTGCT GACGACCATG CAAATGCCAG AGTCGGTGCG ACGTATGGTA TTGGGTGCGA CGTTGCTGGT CATGATCTCG ATCTATGGGC GTCAGCGCGG TTTTCGTCAG TAA
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Protein sequence | MKRLTISPPL AAVLLAIVLF LLSGFLPNGF GGNLDVAAAQ AVNIVRLSVF LGIIAAGQTL VIISGNEGID LSTGAVVTLT AILTYTIVNG RNEQVLPALL AVLIVGGMIG LINGAGVAFL NIAPLVMTLG MAGVVSGLIL VITQGNVSGA VAPIMTQLIA RPVFQGIPGA ILIWIVFAAL MWLLIERTTY GRHLFAIGTN RTTARLSGIR VTAVVIGTYA LSGMLAGLGG FLVVGNTGVV HIRIGDPFLF PSIAAVAVGG TLLTGGKGSY FGTMAGALVL TLITSLLTTM QMPESVRRMV LGATLLVMIS IYGRQRGFRQ
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