| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2586 |
|---|
| Symbol | |
|---|
| ID | 5209555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 3210506 |
|---|
| End bp | 3212119 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640596190 |
|---|
| Product | amidohydrolase 3 |
|---|
| Protein accession | YP_001276912 |
|---|
| Protein GI | 148656707 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0687512 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.83708 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAC CCCGTCTCAT CCTTACCGGT GCGACGGTCT ATCCGATCAT CGCTGAGCCG
ATCCGTGACG GCGCGGTTGC GATTGGCGAC GACCGTATTC TTGCAGTCGG GCGATCTGAG
GCTGTCGAGG CGCTGGCGGG AGCCTCCACG CGGGTGGTTC GTCTTCCGCC GGAGTATGCC
GTCCTCCCGG CGTTCCACGA TTCGCACCAG CATTTGCTGA GTTATGTGCG CAGCCGCACT
CGCGTGCCGC TGTGGGATAC GACCAGCATT CCGGCGCTGC TGGAGCGCCT GCGCGCGGCT
GCGGAACGTC GCCCCGCCGG ATCGTGGATT GTCGCCGTCG GGCACGACCA GGGGCGGCTG
GCGGAACGTC GCCATCCGAC GCTGGCGGAA CTCGATGCTG CCGTTCCCGC GCATCCGTTG
CTGGTCTATC GCGCCTGCAA CCACATGGCG CTGGCGAATT CGATGGCGCT GGCGCGCGCC
GGGGTGACGC CAGCGACTCC CGATCCGCCG GGAGGGCGCA TCGAGCGCGA TGACCATGGC
AACCTGACCG GCGTTCTGCT CGAAGCGGCG ATGTCGCTGG TAGCCGGTGC AGTCGAAGCG
CCCGCTATCG ACTGGCAGAG CGGGTTGCGC GATGCAGCGC GCGAGTATCA CCGGCGCGGT
ATCGTCGCTG TCGGCGAGGC GGCGTTGGGG CATGTCAACG GGGTGCGCGA TCTGGAGATC
GTCGCTGATG CGATCCGTGG CGGCGGGATC GGTCTGCGGA TGTATGTAAT GGCGTATGGC
GATGTCGCAG CGCAGATGCT GGAGGCTGCC GAAGCAGGCG CATGGCGCGA GGTGTGGCGT
GACGACGGGT GGTTGCGCTT TGGCGCGATC AAGTATTTTG CAGACGGAAC GCTTGGCGGC
GGCACGGCGT GGCTGACCGA AGAGTATGGC GATGAGCCGG GCAATCGCGG TTTTCCGCTG
CTGGCGGCGG AGGAACTCGA TGCGCGAGTG CTCCGCGCGC ACCGCGCCGG GTTTCAGGTG
GCGATCCACG CCATTGGCGA CGCAGCCGTG ACCATGGCGC TCGACGCATA TGAGCGCGCA
CTGACCGTGC TTCCTCGTTC CGATCATCGC CACCGCATCG AACATGTCGA GGTCATCCAT
CCCGGTCTGC CGGAACGTTT CGCGCGTCTG CGAGTCGTCG CTGCTATACA GTCCTGTTTT
ACCTTTTGGG AAGAGGGGGA CGTGACCCGG TTGGGACCGG AACTGGCGCC CTGGGGACAC
GCCTGGGGCG CATTGCAGCG CGCTGGCGTT GTGCTGGCGA ACGGTTCGGA TAACCCGGTG
TTGCCGGATT TTGCGCCGTT GCAGGGAATC GCGGCGGCGG TGACGCGCAT GGCGCACAAT
GGTCGCCGTA TTGCCCCACA TCAGGCAATC GGTTTGATGG ATGCGATCCG TAGTTATACG
TGGGGCAGCG CCTATGCCGC GTTCGCCGAA CGCGATCAGG GGGCGCTGGC GCCCGGCAGG
TACGCCGATA TTGCCGTTCT CAGCGAGAGC CTGCTGGATG TCGAACCGGA GCGTAGTGCT
CGTGTTCCGG TTGTGATGAC CGTCGCTGGC GGGACGGTTG TGTATGAACA ATAG
|
|---|
| Protein sequence | MKTPRLILTG ATVYPIIAEP IRDGAVAIGD DRILAVGRSE AVEALAGAST RVVRLPPEYA
VLPAFHDSHQ HLLSYVRSRT RVPLWDTTSI PALLERLRAA AERRPAGSWI VAVGHDQGRL
AERRHPTLAE LDAAVPAHPL LVYRACNHMA LANSMALARA GVTPATPDPP GGRIERDDHG
NLTGVLLEAA MSLVAGAVEA PAIDWQSGLR DAAREYHRRG IVAVGEAALG HVNGVRDLEI
VADAIRGGGI GLRMYVMAYG DVAAQMLEAA EAGAWREVWR DDGWLRFGAI KYFADGTLGG
GTAWLTEEYG DEPGNRGFPL LAAEELDARV LRAHRAGFQV AIHAIGDAAV TMALDAYERA
LTVLPRSDHR HRIEHVEVIH PGLPERFARL RVVAAIQSCF TFWEEGDVTR LGPELAPWGH
AWGALQRAGV VLANGSDNPV LPDFAPLQGI AAAVTRMAHN GRRIAPHQAI GLMDAIRSYT
WGSAYAAFAE RDQGALAPGR YADIAVLSES LLDVEPERSA RVPVVMTVAG GTVVYEQ
|
|---|
| |