| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2437 |
|---|
| Symbol | |
|---|
| ID | 5209406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 3011281 |
|---|
| End bp | 3012318 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640596042 |
|---|
| Product | isopentenyl pyrophosphate isomerase |
|---|
| Protein accession | YP_001276764 |
|---|
| Protein GI | 148656559 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1304] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases |
|---|
| TIGRFAM ID | [TIGR02151] isopentenyl-diphosphate delta-isomerase, type 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.937365 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0183837 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAT CTGAACAGAC GAGCAGCCGC AAGCTCGATC ACGTGCGCAT TGTGCTGGGT
GAAGATGTTG CCGCCAAAGG GGTCACTACC GGTTTCGCCG CTTACCGCCT GCCGCACGAA
GCTGCACCTG AACTCGACCT TGCCGAAATC GATACCAGTG TGACGTTTCT GGGAAAACGA
ATGCGCGCGC CGCTTCTCAT CAGTTCAATG ACCGGCGGTG CGCGTGATGT GGCGCGGATC
AATGTGGCGC TCGCTGAAGC TGCCGAAGCG CTTGGACTGG CGATGGGGGT CGGTTCGCAG
CGCGCAGCAC TGGTTGATCC GCGCCTGGCG GACACCTATC GCGTTCGCCA CGTCGCGCCC
ACGATCCCAT TGCTGGCGAA TCTCGGCGCC GTACAGCTCA ACTACGGTTT TGGCGTGGAT
GAATGTCGTC GCGCGGTCGA TATGATCGAA GCCGACGCGC TGGTGCTGCA CTTCAATGCG
TTGCAGGAAG CCGTTCAACC CGAAGGGAAC ACCAACTTCA AAGGATTGTT GCGGCGGATC
GAAGAAGTGT GCCTGCGCCT CGATGTGCCG GTGATTGCCA AAGAAGTGGG AAACGGCATT
GGTGCAGCGA CGGCGCGACG TCTGGTTGAT GCCGGCGTGA AAATTATCGA TGTCGCTGGC
GCTGGTGGCA CCAGCTGGAG CGAAGTCGAG CGATACCGCC ATACTACCGG GCGCGGTGCA
CAGGTGGCTG GCGCTTTTGC CGGATGGGGC ATTCCCACCA CCGAGGCGAT CCGTCAGGTG
CGCGCTGCGC TTCCCGACAT TACGATCATC GGCAGTGGCG GTGTGCGAAG CGGCGTCGAT
GTGGCAAAGG CGATTGCGCT TGGCGCCGAC CTTGCCGCCA CTGCGCGACC CGCGCTCATT
CCTGCGGTCG ATGAACGTGG CGCGGTGGCA GTCATCGAAA GTTTGCAGAC CTATATCGAC
GAACTGCGGA TCGCAATGTT TTGCACCGGG TGCGGCGACC TGACAGCGCT GCGGCGGTTG
CGCCTCGAAC GGGTCTGA
|
|---|
| Protein sequence | MSESEQTSSR KLDHVRIVLG EDVAAKGVTT GFAAYRLPHE AAPELDLAEI DTSVTFLGKR
MRAPLLISSM TGGARDVARI NVALAEAAEA LGLAMGVGSQ RAALVDPRLA DTYRVRHVAP
TIPLLANLGA VQLNYGFGVD ECRRAVDMIE ADALVLHFNA LQEAVQPEGN TNFKGLLRRI
EEVCLRLDVP VIAKEVGNGI GAATARRLVD AGVKIIDVAG AGGTSWSEVE RYRHTTGRGA
QVAGAFAGWG IPTTEAIRQV RAALPDITII GSGGVRSGVD VAKAIALGAD LAATARPALI
PAVDERGAVA VIESLQTYID ELRIAMFCTG CGDLTALRRL RLERV
|
|---|
| |