| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2200 |
|---|
| Symbol | |
|---|
| ID | 5209163 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 2710240 |
|---|
| End bp | 2711481 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640595802 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_001276530 |
|---|
| Protein GI | 148656325 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.580095 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.517802 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAGT TTTTTATGAA CGGTCATACA GAAAAACCGG AAATGTGCGT GCACGACCCT
CCCGATGTCG CGCCCACTCC AGCCGAGCGC CTGGCAGAGT TGCGGTTTTG TCAGGACACC
GGACGGTTGA GCAACTGGCA GCGTCCGGTG GCGGAGACAT TGCTGCGCGC CGGTCTTGGC
GAGGGATACA CCGCTGCGGA ATGGGCGGAA GTTGCCTGGT ACGGTCCGCT CGACGCATGG
GTTCGCGCTG GCTCGCGCGT CTCGGACATG TTCATCGACG GACCTGATCG AACGATTGTG
GTCGTCGAAG AGGGCAATCG AAGCGATACC GGGATTCGCG TCTGCAATGA ATGGCTGCGC
TGGACGCAGC GCCAGTTGCT GCTGCGGGCC GGATTCGTCA CTCCTGATGA CCCGGACGAC
TGGCGCAACG CCGATGGGCA GATCGTCCAC GCGCTCTACG GCACCGCCGA CCGGCGATTG
CGTTTTGCCG TCACCCGTCC GCCGTACACC CCGGACGGCG CGACGATTGC GGTACGCGTG
CTTCCTGCTC GCTGGAAAAC GATCGATGAT CTGGTTCAGC ACGAAGGAGG CGTGCTTTCA
CGTGAAGCCG CCGACCTGTT GATTGAAGCC ATCCGGCGCG GCGTCACCCT TCTGATTGCC
GGAAGCGCAG GCAGCGGCAA GACGACCCTT ACTGCCGCCT TGCTCCAGGC AATCGCTGCT
GAGAAGCGCG TCATCATCAT CGAAGACGCG CGCGAACTGC CGCTGCCGCC GGACGGGATG
GCGGTAGAAG TGCTGCGCAG TCGCAGCAGT TTTGCACACT GCGTCCGGCT AACGCTCCGG
CAGCGTCCCG ACCTGATTGT TCTCGGAGAA GTGCGCGGAC CGGAAGCGCT GGCGATGCTC
GAAGCCGCTG CCACCGGGCA TCCCGGCATC TGCACGATCC ACGCCCCCGA TACGCTGACC
GCGCTGCGCA ACCTGGAGCG ATTCGCCACG CTCGATGGGC TGGCGTCACC GGGCGTGGTG
CGCGGCATGA TGACAAGCGG CGCTGTACCC CTGATCGCGG TGCATATTGG CATCTATGGC
GGGCGTCGTC GTGTCGGGCA GATCGTCGAG GTCATTGTTA CGAGCGGCAG TCAGGCAGGT
GATTCGCTGC CACACAACCC ATTGTTCGCA TTCAATCACG CCACGAACCG CCTCGAACGG
AAATATCCCG TTCAGGGCGC ATGGGGCAAA GGTCGGCTGT AA
|
|---|
| Protein sequence | MSEFFMNGHT EKPEMCVHDP PDVAPTPAER LAELRFCQDT GRLSNWQRPV AETLLRAGLG
EGYTAAEWAE VAWYGPLDAW VRAGSRVSDM FIDGPDRTIV VVEEGNRSDT GIRVCNEWLR
WTQRQLLLRA GFVTPDDPDD WRNADGQIVH ALYGTADRRL RFAVTRPPYT PDGATIAVRV
LPARWKTIDD LVQHEGGVLS REAADLLIEA IRRGVTLLIA GSAGSGKTTL TAALLQAIAA
EKRVIIIEDA RELPLPPDGM AVEVLRSRSS FAHCVRLTLR QRPDLIVLGE VRGPEALAML
EAAATGHPGI CTIHAPDTLT ALRNLERFAT LDGLASPGVV RGMMTSGAVP LIAVHIGIYG
GRRRVGQIVE VIVTSGSQAG DSLPHNPLFA FNHATNRLER KYPVQGAWGK GRL
|
|---|
| |