| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1861 |
|---|
| Symbol | |
|---|
| ID | 5208821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 2301113 |
|---|
| End bp | 2302750 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640595469 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001276200 |
|---|
| Protein GI | 148655995 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1353] Predicted hydrolase of the HD superfamily (permuted catalytic motifs) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.037069 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTATT TGCTGGCTGC TGAAGCCGAC AAAATCCAGG ATTTCATCTT CCGCTCCTCT
CGTCTGCGCG AAGTGGTGGG CGCCAGCCAG TTGTTAACGC GCTTTTGTCG CAGTATTGAC
GATACACTGG CAAAGAAACA CGGTGGTCAA GTTGTGGTCA ACGACGGCGG CAGTTTTCGC
GTGATCTTCG ACGACCTGGC AAAGGCGCGC GCCTTTGGCG CCGATCTGGC TGAGCTCTAT
CGCCTGGCGT TGGGTGGAAG CCTGACTGTA GCCGAGCCGG TTAGGCTAGA CGGCGACTTT
CGCAAAGCCA ACGAGCAGGC AGGGGAAAGG CTGCGCTGGG CAAAAAGCCG CCGACAGGGC
GCAATCGCCG AAGTGCATAT GCCGTATGTG GCGTTCTGTG CATCGTGTGG AGTGGCGCTT
GCCAGGAAGC GTGAACGACT AACAGGAAGG CGCGCTACAA ACCGGTCTTC CTACATATGT
GAAGCATGCC GGGCGAAGGC TGCGGAGCGT GATCGGAAAC CACGCGCAAT CCTCGATGAG
TTGTATGAAG CATATTGCAC GTCGCTCGGA ACTCAACCGA CAATAAATCT CGATTGGCCC
GAAGATGCCG ATGATATTGC CAGGTTAGAT TTACGCCAGC GCAATTATGT CGCCTATCTC
GTCGCCGACG GCAATGGCAT GGGTCGCACG TTCGGCATGT GTGGTCAGGA GCAGCTTACA
AAGCTTTCCG AAGGGTTATC GCCCATTCTG CAGGACAGCC TGGCAGCGGC AGCAGCCAGT
TTTCGGAACG TTGTTTCAGA ACAGGCGCAC ATGATCCCCA TGATCCCGCT CATCCTTGGC
GGTGATGACT TGTTTGCTCT TATCCCGGCG CCGTATGCTC TCGACTTCAC CCGACGATTC
TGTCTGGAGT GGGAGCGGCG TATGAAGAAA CTGGCGGATG AGATTGGACT GACTGACCTT
CCGCGCCCCA CTGTGGCTGC CGCTGTCGTC ATCTGCAAGG GAACATACCC ATATGCGCTG
GCGCATCGTC GGGCTGAAGC GTTGCTTAAG GAGGCGAAGC GCCAGAGCAA GCTGCTGGCT
GCAGAGACGG GTGAGCATCT TTCCGCTGTC AACTTTGAAG TCATCCTGGG GAATCGCCTG
GCTGGTCAGG AAGATGACGA CGCTGAACAC TCTAGGATCG TCCGTCTCAC GCTGCGACCG
TACTGGGTGT GTGATGGCGA CCTTTCTCAA AACGCAAAAG AACGAGGGTT GGAAATCAAA
ACCCTTCTCG ATCAACGTCT GACTCTTAAG GATATTCCGA GCAAGCGTCT GGCGGAACTG
CGGCGCTGCT TTGAGGATGT GCCGACGTCG ATAACCATTC GAGATCGCAA TCAGACAATG
CAAACCTGGA CGAACCGCCA GCTGGATAAC GTGCTGCAGC GGCTCAGCAC AACATCAAGA
GCAAAACTGG AGACAGCCCT GACAACGCTG GGCAAGTCCA GAAACGACAG CAACAGTGAC
CATCACTGGC GAGAAATCCG TCGGGGCGAC GCCACACCGT TTGCGCATGG CATGCTGGAT
CTCCTGGAGT CCTGGGATTT TGCTCAGGAC CTGGAGTATC GTCCGGATGA TTACGAGCCG
CAGGAGGAAG AAGCATGA
|
|---|
| Protein sequence | MPYLLAAEAD KIQDFIFRSS RLREVVGASQ LLTRFCRSID DTLAKKHGGQ VVVNDGGSFR
VIFDDLAKAR AFGADLAELY RLALGGSLTV AEPVRLDGDF RKANEQAGER LRWAKSRRQG
AIAEVHMPYV AFCASCGVAL ARKRERLTGR RATNRSSYIC EACRAKAAER DRKPRAILDE
LYEAYCTSLG TQPTINLDWP EDADDIARLD LRQRNYVAYL VADGNGMGRT FGMCGQEQLT
KLSEGLSPIL QDSLAAAAAS FRNVVSEQAH MIPMIPLILG GDDLFALIPA PYALDFTRRF
CLEWERRMKK LADEIGLTDL PRPTVAAAVV ICKGTYPYAL AHRRAEALLK EAKRQSKLLA
AETGEHLSAV NFEVILGNRL AGQEDDDAEH SRIVRLTLRP YWVCDGDLSQ NAKERGLEIK
TLLDQRLTLK DIPSKRLAEL RRCFEDVPTS ITIRDRNQTM QTWTNRQLDN VLQRLSTTSR
AKLETALTTL GKSRNDSNSD HHWREIRRGD ATPFAHGMLD LLESWDFAQD LEYRPDDYEP
QEEEA
|
|---|
| |