| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1562 |
|---|
| Symbol | |
|---|
| ID | 5208517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 1909915 |
|---|
| End bp | 1911027 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640595168 |
|---|
| Product | HEAT repeat-containing PBS lyase |
|---|
| Protein accession | YP_001275904 |
|---|
| Protein GI | 148655699 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1413] FOG: HEAT repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.544381 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACGA CTCCTTCCGA CAATAACCAG ACACCCGATG ACGTCAATGG CGCGCCATCG
GCGGAACGCG ACGGTGAGAC AGCAAATGGT GCGCAGACGG GCACGCGCAG TCTGGTGCAG
GCGCCACGCG CTCTGGCGAC TCCCGACCGG CGTGTGAGCG CCAATGTAGC CGGTGCGGCG
CTTCAGCAGC GTATCATGAC CCTTGTCAGC GCGCTCGGCG ATCCGCGTCA TCCGCTCCAC
GCGCGTGCCG TCGAGGATCT GGTAACGCTG GGTGAACCGG CGGTGCCGGC GCTGATCGAG
GCGTTGCGCA CGCATGAGCC GTGGCTGATC GCCTATCGTG CCACTGAAGC GCTGAGTCAG
ATTGGTGATG GTCGCGCTGC TGGTCCGCTC GTGGATGCGC TGCGTCACCC AAACAGCAAT
GTGCGCTGGG GTGCGGTGCG CGCACTGGCA ACCGTGGGGG ATGCGCGTGC ATTGATCGAA
CTTCGCCGGG TGGCCCGCAC GGATCGCAGC AAGACCAGTT GGGGCGAATC GGTCGGCGAT
ACGGCGCGCG TTGTGCTGGA TCAGATGCAG AGCCGCACGC TGCTGGCGCG CGTCGCCGAA
CTGATCAAGA CGGCGATCGC CTGTGTGTTG ATGCTCGTCG CGCTGATCTT TGCCTGGAGT
GTGCTGACCG AGCTACGTGA TGAACTCACC CGGATTGGGC GGGTCGAACC GGCGCCGGTG
ATTGTTGCGC CGCCAATGCC CACGACCGTG CCGCAGGCAA TCGTCACGCT GCCACAATCG
CCAACCTCGC CGCCGACCGT GCAACCCGTG GCGCCGACAC CTGTCGAGGC GCCGCCGCTG
ACCGGTGTTG TTGTGACATC AGGAAATGTG CGCGCAACCC CAGCGCGCCT GCCGGATAAT
GTCATCGGTA GTGTGATGGC AGGTGATGCG CTCATTTTTC TGGGGGTGAC TCCGGACGGA
GCGTGGTACC GTGTGCGGCT CGGTTCACCG GCGGCGGCAT CGTCACAGAT CCGCAGCGTC
GATGGGAGCG GATGGGTGAG TGCGTCCCTC GTTGAAGCGC CGGAGCGCGT GCCGGTCGAA
ACGCCGCCTC CCGTTCCCAC GCCGACGCCA TAG
|
|---|
| Protein sequence | MNTTPSDNNQ TPDDVNGAPS AERDGETANG AQTGTRSLVQ APRALATPDR RVSANVAGAA
LQQRIMTLVS ALGDPRHPLH ARAVEDLVTL GEPAVPALIE ALRTHEPWLI AYRATEALSQ
IGDGRAAGPL VDALRHPNSN VRWGAVRALA TVGDARALIE LRRVARTDRS KTSWGESVGD
TARVVLDQMQ SRTLLARVAE LIKTAIACVL MLVALIFAWS VLTELRDELT RIGRVEPAPV
IVAPPMPTTV PQAIVTLPQS PTSPPTVQPV APTPVEAPPL TGVVVTSGNV RATPARLPDN
VIGSVMAGDA LIFLGVTPDG AWYRVRLGSP AAASSQIRSV DGSGWVSASL VEAPERVPVE
TPPPVPTPTP
|
|---|
| |