| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1438 |
|---|
| Symbol | |
|---|
| ID | 5208392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 1752154 |
|---|
| End bp | 1753797 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640595047 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001275784 |
|---|
| Protein GI | 148655579 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1353] Predicted hydrolase of the HD superfamily (permuted catalytic motifs) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.014428 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGC CAGAAATGTC CACCGTTTTG CTCCACGGTG ATATCGATGC TATCAAAAAC
TATGTCTTTG AAACCTCGTC ACTACCTCAA ATCCGTGGTG GCAGTCAATT GTTGGTAGAG
TGCGAGGAAG AGATTAAAGA GAAGCTAAAA TATCTGGAAG AGAGTGAAAT ATACTGTTCT
GGTGGTAGTT TCCTTTTCGC TATCCCTAAA AATCAGGTCA AAGAAGCGAA ACAAGAAATA
GAAAGGGTAT GCTTGGAAAA AACAGGTGCT GCTACATTGA CAGTAGTCTA CGAGCAAAAC
CTGCCTCCCG ATTCTCCCGA TACATCCCCC ACAAATTCAT GGGCTCAGCG CCTCTGGCAA
GCATACCTGG TCCAGGACGG CAACAACAAG ACCTCCCCCA AGCCATTTGC CCGACGGATA
GCCTTCCTGG CCGGCCAACT GCGAGAGGCC AAAGCTCAAA AAACCCGAGC TCCTTTCTGG
GAAGCCCCGC CTTTTGGCCT GCGTTGTGAC CTATGCGGCA AGCGGGTAGC AGCCCGGTTA
TGGCGCTCGC CAGAGGGAGA AGAGAAGCGG TTGTGTCTAG TCTGTTGGAT CCGCTATGAA
GCAGGCAAGG GGGGAGGGCA GTTCAATAAC CGCTTTAAGC AATGGGCGGG ATCCAAGGAA
CTAACCATTT CCGCACATCA CCCGGTTGAT CTAGACCATT TAGTCCAGAG TGCTCGCGGT
CACCAGTACC TGGCTTTCCT CTATGCAGAC GGCAATGACA TCGGCGGGCT GTTACAGCGC
GTAAGTGATG AGAAGGAATT GCGAGGTCTG TCAAAGATCC TGCGCCGTGC GGCAGAAGAG
GCGCTCTTTG AGGCCCTTAG AAAAGTCTGC GGACAGGCCC TCCGTGATGC CGATTACTGG
CCCTTTGAGA TTGTCCACAT CGGCGGTGAT GATGTGACCC TGCTCATCCA GTCCGGCTAT
GCCTGGGAAG TAGCGGTCGA GTTCCTGGAT CGGTTTGAGC AGAAAGCCAA CCAGGAATTG
AGAGATGGGT TAGAAAGGCT GGCAGATTGG AAAATCACCG CTTCTGTCGG CATTGCTGTG
GCAGATTCCA AGTATCCCAT TCGTTATCTG GAAAAACTGG CCGAAGATAT GCTGAAAAAG
GCCAAAAGAA GGGCCAAGGA GGATCCACAA AACCCTTGTA GTACAATCAA CTTCCTCTGG
CTTCCCAGTC CAGTAGCAGC CGAATCGGCA GATCCGTTGC TATCGTACTA CGAGCCTCGC
CAGAACGTGG TCCTTACGGG CCGGCCCTAT ACATTGGAGG AAGCCGGGTC CTTGGTAGTC
CTGATGGAGC AGGCCACTAA AATGCCACGT AGCCTCCGTC ATCGCTGGGC TGGAGCTCTG
GAAAAAGGAC TTTTTGTTTC CCTCAACACC ATTTACTACG ATATTGCTCG CCGTAAAGAA
GGGGAACGTC ACATATTCCA GAACTTTTTG CAAGCTCTGG GAGATCTCGC ATTCGTCCGA
GGCATGACAA AGCTACCGGC GCCGCTGTGG GCGTTTGATA AATCTACTGG AAAGTGGCGT
ACTGCTCTCC TTGATGTTCT AGAATTGACC GAACTACGCG CTACGCGCCC CGATGTTGAG
GAAATTTCTG AGGAGTCAGT CTAA
|
|---|
| Protein sequence | MNQPEMSTVL LHGDIDAIKN YVFETSSLPQ IRGGSQLLVE CEEEIKEKLK YLEESEIYCS
GGSFLFAIPK NQVKEAKQEI ERVCLEKTGA ATLTVVYEQN LPPDSPDTSP TNSWAQRLWQ
AYLVQDGNNK TSPKPFARRI AFLAGQLREA KAQKTRAPFW EAPPFGLRCD LCGKRVAARL
WRSPEGEEKR LCLVCWIRYE AGKGGGQFNN RFKQWAGSKE LTISAHHPVD LDHLVQSARG
HQYLAFLYAD GNDIGGLLQR VSDEKELRGL SKILRRAAEE ALFEALRKVC GQALRDADYW
PFEIVHIGGD DVTLLIQSGY AWEVAVEFLD RFEQKANQEL RDGLERLADW KITASVGIAV
ADSKYPIRYL EKLAEDMLKK AKRRAKEDPQ NPCSTINFLW LPSPVAAESA DPLLSYYEPR
QNVVLTGRPY TLEEAGSLVV LMEQATKMPR SLRHRWAGAL EKGLFVSLNT IYYDIARRKE
GERHIFQNFL QALGDLAFVR GMTKLPAPLW AFDKSTGKWR TALLDVLELT ELRATRPDVE
EISEESV
|
|---|
| |