| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1356 |
|---|
| Symbol | |
|---|
| ID | 5208308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 1663500 |
|---|
| End bp | 1665551 |
|---|
| Gene Length | 2052 bp |
|---|
| Protein Length | 683 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640594967 |
|---|
| Product | glycoside hydrolase, clan GH-D |
|---|
| Protein accession | YP_001275706 |
|---|
| Protein GI | 148655501 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3345] Alpha-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTTC CGTCCCGCCT GGATCTCTCG GACGCGGGGT TCGCCTGCGT GCTGGACATG
GCACCCCGTT TTGCGCTGGC AGGTCTGGGG CTGGCGGGCG AACATCGGGC GCTTGAGTCG
TCGTCGCTCT TCCTGGCAAT CATTGATGCG CAGGTTGTCG ATGCGCAGAC GCCAAACCTG
TACGTGCGGA ATGTGTCGGT GGACGATGCA ATCCCTGGAC GACGCCATGC GCGCATCGAA
CTGCTGCCTG GCGGGTTGGG AGTCGTGATC GATTACCATA TCGTGCGCTA CAGCGATGCG
TTTGCTATCG AGACCTGGAT CGTCGTGCGG AATGAAGGGG CATTGCCGCG TCGGGTGACG
CGCCTGGATT CACTTGCGCT CGATCTGCTC CCCGGCAGGT ACGATCTGCA GGCGTATACT
GGCGCGTGGG GCGCCGAGTT CGAACCGCAG TCGATGCCGC TGACATCCCC GGTCACCCTC
GAAAGTCGTT CTGGTCGCTC GTCGCACGGT CACCATCCCT GGTTTGCCCT GGTGTGCGAC
GGTCGCTCGA TCATCTCCGG CGCAGTTGCC TGGTCAGGGA ATTGGGCGAT CCGGTTGATG
CCGCGCCTGG AGGAGGTCGT CGCACTATCG GCAGGGTTGC ACGATTGGGA ATTCGCTGTC
GATCTTGCGC CCGGCGCCTC GGTTGAGGCG CCGCCGGTCG TGCTGGTGTT TGCCCGTGGT
GATGATCTCG ACGAAGCAGC GGTTCAGTTT GCGCGTCTGG GGCGACGCTT CTGGTATCCG
CGCAATGCGC TCGCCGACCG GTTGCCGGTC GAGTGGAACC ACTGGTGGGC GTATGAAGAT
CGGGCGCTCG ACGAGGCGAC CTTCCGCGCC AATGTCGATG TTGCCGCCCG GATGGGCATC
GAGGTGTGCA CGCTCGACGC CGGATGGTTT GGCGCGTCCG ATGCTGGGAC GCACTGGTAC
GACCAGCGCG GCGACTGGGA GATGGTCAAT GCGGTGCGAT TTCCTTCCGG CATTCGCGCG
CTTGCCGATG ACGTTCACGC ACGTGGCATG CGCTTCGGCA TCTGGTGCGA GATCGAGGGG
TTGGGCGTCC GCGCGCGACT GGCGGAAACG CATCCTGATT TCGTGGCGAT GCGTCATGGA
AGTCGGATCG GGTATGTGTG CCTGGGCAAT CCGGCAGCGC AGCAATGGGC GTTCGAGACG
CTTGATCATC TCATCCGCGA CTACGGGTGC GACTGGATCA AACTCGATTT CAATCTCGAC
CCTGGCGCCG GGTGCAACCG CACCGATCAC GGTCACGGCG CCAGAGATGG GTTGTATGCG
CACTATCGCG GCTACTATGC GCTGCTTGAT CGAGTGCGCA GCGTTCATCC CGACGTGGTG
CTGGAAAACT GCTCATCGGG CGGTCTGCGG ATCGATCCGG GCATTGCGCG TCGCACCCAC
ATGGCGTTTT TGAGCGATCC CGACTGGCCC GAACATAGTT TGCAGGTCTT CTGGGGCGCC
ACTCAGATGC TGGCGCCGGA CGCCTGCCTG CACTGGAGCT ACTGCGAGTG GTCGTTCGCC
AGGCATCCGA GCCAGACGTT CAATCCGCGC GATCCGTCGC TTCAGCCGCA TCAGGTCGAT
TTCTATACCC GCATTTCAAT GCTGCGCCGC TTCGGGTTTT CGCAGCGATT GCCCGATCTG
CCGGACTGGG TTGCGCAGCG TTATGCGGAT CACATCGCCT TCTACAAGGC GGTTATGCGG
CGTTTCGTGC GTGAGGCGGA CATGTACCAT CTGACGGGGC AACCGCTCGG TGAAGGACGC
GGTGACCGCT GGGCCGGTTT TCAATATCGG ATGCCCGACG GCAGCGAGCA TCTGGTCGCC
GTCTTTCGTC TGCCGGGCGC TGAACCATTG CGTGTGCTGC GCCTGAAACA TCTCCATCCA
GAGCGTATCT ACACATTGCT CTGGGTGGAT TCCGGTCAAC AGACGCAGGC AAGCGGCGCT
GAATTGATGG ATACCGGGTT GCGCTTCGAT GACCTGCCCG AAGAAGGCTC GGCGCTGGTG
CGGATCAGGT GA
|
|---|
| Protein sequence | MTLPSRLDLS DAGFACVLDM APRFALAGLG LAGEHRALES SSLFLAIIDA QVVDAQTPNL
YVRNVSVDDA IPGRRHARIE LLPGGLGVVI DYHIVRYSDA FAIETWIVVR NEGALPRRVT
RLDSLALDLL PGRYDLQAYT GAWGAEFEPQ SMPLTSPVTL ESRSGRSSHG HHPWFALVCD
GRSIISGAVA WSGNWAIRLM PRLEEVVALS AGLHDWEFAV DLAPGASVEA PPVVLVFARG
DDLDEAAVQF ARLGRRFWYP RNALADRLPV EWNHWWAYED RALDEATFRA NVDVAARMGI
EVCTLDAGWF GASDAGTHWY DQRGDWEMVN AVRFPSGIRA LADDVHARGM RFGIWCEIEG
LGVRARLAET HPDFVAMRHG SRIGYVCLGN PAAQQWAFET LDHLIRDYGC DWIKLDFNLD
PGAGCNRTDH GHGARDGLYA HYRGYYALLD RVRSVHPDVV LENCSSGGLR IDPGIARRTH
MAFLSDPDWP EHSLQVFWGA TQMLAPDACL HWSYCEWSFA RHPSQTFNPR DPSLQPHQVD
FYTRISMLRR FGFSQRLPDL PDWVAQRYAD HIAFYKAVMR RFVREADMYH LTGQPLGEGR
GDRWAGFQYR MPDGSEHLVA VFRLPGAEPL RVLRLKHLHP ERIYTLLWVD SGQQTQASGA
ELMDTGLRFD DLPEEGSALV RIR
|
|---|
| |