| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1258 |
|---|
| Symbol | |
|---|
| ID | 5208210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 1545046 |
|---|
| End bp | 1546530 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640594874 |
|---|
| Product | periplasmic solute binding protein |
|---|
| Protein accession | YP_001275613 |
|---|
| Protein GI | 148655408 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00438687 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000164305 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCTCACAC GGTTCTTTGC CCTGATGATC ATCGTCGTGC TGGCGCTCAG CGCGTGCGGC
GGAGCGCAAC CGGCGCCCTC AGGCGGAGCG TCGCCGACGG TTGCGCCTGC CGCGCCCACA
GTTGCGCCTG CCGCGCCCAC AGTTGCGCCG ACCACGCCGC CCGTGGCGAT GGCGCCAGCG
CTCAATGTTC TGGCGGTGCA ATCATTTCTG GCTGATATCG CGCAGAATGT CGCCGGTGAC
CGTTTGAAAG TCGAAGCGTT GATTCCGCTC GGCGTCGATC CGCATATCTT CGAACCAACA
CCCGCAGATG TACGCAAAGT CGCCGACAGC GACGTTCTGA TCATCAATGG CGCAGGTTTT
GAAGAGTTTC TCGCCAGTCT GCTGGAAAAC GCCGGCGGCG AGCGCCTGGT TATCGAAGCG
TCGAAAGGGC TGAGCAGTCG CACAGCGCGT GAAGGCGAAG TGGCGGTCAT GAGTCCGGAA
GAACTGACCG ATGCGCTGTG CGTCGAGGCA GCCGATCTTT TCCTGGCGGC GGAAGAGATT
ACTGCTGGCG CTGAGCGAGC ATCCGCCGTC GAACTCGGCG CCCACGCGGA GAAAGAAGCC
GATCACGGGC ACGATCACGA TCACGAGCAT GCCCACGATC ACGGCGGGAT GTTCTGGCAG
GTGATGCTGA ACCGACAGGC GGACGGCACG TATGCCGGGT TCTTGAAATG GGACGCTGAA
GGCGGTGAGA TCGCCATTGC GACCGGTGAT GGCGCCCTGG TTGTGACCGG CATCGACACA
GGGGCAGCAC TCGACGCCGA AGAGACGCTG ACGCTCAACT GCTCCGGTTT GACGCAGGCG
ATGATCATGG ATGTGGAGAA GGGCGAGTAT CTGCTGGCGC TGACCGGTTT TCGCGCGCCG
CAGGCAACGC TGATGATCGG CACGCCCGGC GGGCATCATC ACCACGATGA GGGCGACCCG
CACTTCTGGC TCGATCCGAT GAACGTCGTC ACGTATGTCG CCAACATCCG CGACGGATTG
ATCAGCGTCG ATCCCGCTGG CGCCGAGGTC TACCGCGCAA ATGCTGAGCG CTACATCGCG
CAATTGAACG AACTCGACCG CTTCATTGCC AGCGAAGTTG CTGCAATTCC TGAAGCCAAC
CGCAAACTGG TGACGAACCA CGAAAGTTTC GGGTATTTTG CCGACCGCTA CGGCTTCCGT
ATCATTGGCA CGATTGTGCC CGGCGTCACC ACCGGCGCTT CCCCGTCGGC GCAGCAACTG
GCGCGGTTGA CCGAGCGAGT GCGCGATGCG GGTGTCAAAG TCATCTTCCT GGAAACCGGC
GCCAATCCGC AACTCGCCGA ACAACTGGCG CGCGAGACAG GGATCACTAT CGTTTCTGAT
CTCTACACGC ACTCGTTATC GGAAGCCGAT GGACCGGCGC CGACATATAT TGATATGATG
CGGTACAATG TTAAGCGGAT CGTTGAGGCG CTGAAACAGG GATGA
|
|---|
| Protein sequence | MLTRFFALMI IVVLALSACG GAQPAPSGGA SPTVAPAAPT VAPAAPTVAP TTPPVAMAPA
LNVLAVQSFL ADIAQNVAGD RLKVEALIPL GVDPHIFEPT PADVRKVADS DVLIINGAGF
EEFLASLLEN AGGERLVIEA SKGLSSRTAR EGEVAVMSPE ELTDALCVEA ADLFLAAEEI
TAGAERASAV ELGAHAEKEA DHGHDHDHEH AHDHGGMFWQ VMLNRQADGT YAGFLKWDAE
GGEIAIATGD GALVVTGIDT GAALDAEETL TLNCSGLTQA MIMDVEKGEY LLALTGFRAP
QATLMIGTPG GHHHHDEGDP HFWLDPMNVV TYVANIRDGL ISVDPAGAEV YRANAERYIA
QLNELDRFIA SEVAAIPEAN RKLVTNHESF GYFADRYGFR IIGTIVPGVT TGASPSAQQL
ARLTERVRDA GVKVIFLETG ANPQLAEQLA RETGITIVSD LYTHSLSEAD GPAPTYIDMM
RYNVKRIVEA LKQG
|
|---|
| |