| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0250 |
|---|
| Symbol | |
|---|
| ID | 5207185 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 319197 |
|---|
| End bp | 319868 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640593880 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001274636 |
|---|
| Protein GI | 148654431 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.204333 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0355708 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTG AGTACGATGT TATCACGTTC GACTGTTATG GCACGTTGAT CGACTGGGAT
CGCGGCATTC AAGAAGGGTT CGCCGCCGCC GCCAGGCGCG TCGGTGTTGA GGTTGATCTC
AATGCGGCGC TCACTGCCTA TCATGCGATC GAGCCGCAGG TCCAATCCGC TGAATATCGC
CCGTATCGCC AGGTGCTGGC GGAAACAGCA CAACGCGCTG CCGCAACCCT TGGCTGGCCC
ATGGACGATG ATACCGCCAG GTTTTTCGCG TCGAGGTTAC CAGAGTGGCC CCCATTCGCC
GACACGAACC CGGCGCTGGA GCGGTTGTAC GCCGCCGGGT ATCGGCTGGG GATCCTGTCG
AATGTGGATG ACGATCTGCT CGAAGCGACA ATCCGGCATT TCACCGCGCC GATCGATCTG
ATCGTCACGG CGCAGCAGGT TGGTTCGTAC AAACCTGCGA CCGGTCATTT CATCGCTGCA
CGTGAACGGA TCGGCGGGTT GCGCTGGTTG CACGCTGCGC AGAGTCATTT CCACGATGTC
GTTCCAGCAG TGCAGATGGG ATTGCCGGTC GCGTGGATCA ACCGCAAACA CGAACCGTTG
CCGCCGGATG GTCCGGCGCC GCTGGTCGAT GTGCCGGATC TGCTGGCATT TGCGGCATGG
CTGGAGGGAT AG
|
|---|
| Protein sequence | MTREYDVITF DCYGTLIDWD RGIQEGFAAA ARRVGVEVDL NAALTAYHAI EPQVQSAEYR
PYRQVLAETA QRAAATLGWP MDDDTARFFA SRLPEWPPFA DTNPALERLY AAGYRLGILS
NVDDDLLEAT IRHFTAPIDL IVTAQQVGSY KPATGHFIAA RERIGGLRWL HAAQSHFHDV
VPAVQMGLPV AWINRKHEPL PPDGPAPLVD VPDLLAFAAW LEG
|
|---|
| |