| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1351 |
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| Symbol | prfC |
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| ID | 5188511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus reuteri DSM 20016 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009513 |
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| Strand | - |
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| Start bp | 1406017 |
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| End bp | 1407594 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640591200 |
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| Product | peptide chain release factor 3 |
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| Protein accession | YP_001271938 |
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| Protein GI | 148544568 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4108] Peptide chain release factor RF-3 |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000276996 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACCAA AAGAACTTGC TGAAGCAGTT AATAAACGGC GTACGTTTGC CATTATTTCT
CACCCGGATG CCGGGAAAAC AACGATTACT GAACAACTCT TGCTTTTTGG GGGAGTAGTT
CGTGAAGCCG GGACCGTTAA AGCACGGAAG ACCGGTAATT TTGCAAAGTC AGACTGGATG
GAGATTGAAA AGAAGCGGGG AATCTCTGTT ACCTCATCTG TTATGCAATT TGATTTCCAA
GGTAAGCGGA TCAATATTTT GGATACTCCA GGGCACGAAG ATTTCTCTGA AGATACTTAT
CGGACATTAA TGGCGGTGGA CTCCGCTGTG ATGGTTATTG ATAGTGCGAA GGGGATAGAG
CCGCAGACCA AGAAGTTATT CCAAATTTGT AAGATGCGGG GAATTCCGAT CTTTACCTTT
ATGAATAAAT TTGACCGGGA TGCCCGTGAA CCACTTGACC TTTTAAATGA AGTTGAAGAC
GTATTAGGAA TTGAGACTTA CCCAATTAAC TGGCCAATCG GTTCTGGTCA CCAGTTCAAG
GGAATCTATG ATCGCTTTAA CCATCGTGTT GCCTTGACTC ATCCAGCTGA TGAAAATAAT
CCTTACTTAC CATTAGATGA AGACGGTAAT GTTGAGGGCG ACAACCCATT AGCTGGTGAT
GGTGAATGGC AAGATGCAAT GGACGGCATG GAACTGGTTG AAGTTGCCGG TAATGAACTT
GATCAAGAAA AGATTGCCAA GGGGGACCAA ACACCGGTCT TCTTTGGATC TGCTTTAACC
AATTTTGGAG TTCAGACTTT CTTGGAGACC TACTTACAGT TTGCCCCTGC ACCAAGTGAT
CACAAAACTG AGGACGGGGA TGTTGTTAAG CCCCTTGATC CCGAATTTTC TGGTTTTGTT
TTTAAGATCC AGGCTAACAT GAATCCTCGT CACCGTGATC GAATTGCGTT TGTCCGGATT
TGTTCTGGTG AATTTGATCG GGGGATGGAT GTTACATTAT CACGGACTAA GAAACCAATG
CGGTTATCAA ATGTGACTGA ATTTATGGCC GATACCCGTG AAAACGTTGA GACAGCTGTT
GCCGGTGATA TTATCGGTTT ATACGATACT GGAAACTTCC AAATTGGTGA TTCTATTTAT
AATGGTAAAA AAGATATTCA ATTTGAAAAG TTGCCACAAT TTACGCCAGA ACTGTTTGTT
CGTGTTTCTG CTAAGAATGT GATGAAACAG AAATCCTTTC ACAAGGGAAT CAATCAATTA
GTTCAAGAAG GGGCTGTCCA GCTTTACCGG AGTTATTCTA CTGGTGATTA TATTCTTGGT
GCAGTTGGTC AGCTTCAATT TGAAGTGTTC AAGTTCCGGA TGCAAAATGA ATATAATTCC
GAGGTTGTCA TGGAACCAAT GGGAACTAAG ACTGCCCGGT GGATTGATCC AGATCAATTG
GATGAAAAGA TGTCGTCATC AAGAAACATC TTAGTCAAGG ATATCCATGA TCAGCCACTA
TTCTTATTTG AAAATCAATT CGCCGAAAAT TGGTTTAAGC AAAAGTACCC TGATGTGAAG
TTAACAGCGA AGTTATAG
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| Protein sequence | MSPKELAEAV NKRRTFAIIS HPDAGKTTIT EQLLLFGGVV REAGTVKARK TGNFAKSDWM
EIEKKRGISV TSSVMQFDFQ GKRINILDTP GHEDFSEDTY RTLMAVDSAV MVIDSAKGIE
PQTKKLFQIC KMRGIPIFTF MNKFDRDARE PLDLLNEVED VLGIETYPIN WPIGSGHQFK
GIYDRFNHRV ALTHPADENN PYLPLDEDGN VEGDNPLAGD GEWQDAMDGM ELVEVAGNEL
DQEKIAKGDQ TPVFFGSALT NFGVQTFLET YLQFAPAPSD HKTEDGDVVK PLDPEFSGFV
FKIQANMNPR HRDRIAFVRI CSGEFDRGMD VTLSRTKKPM RLSNVTEFMA DTRENVETAV
AGDIIGLYDT GNFQIGDSIY NGKKDIQFEK LPQFTPELFV RVSAKNVMKQ KSFHKGINQL
VQEGAVQLYR SYSTGDYILG AVGQLQFEVF KFRMQNEYNS EVVMEPMGTK TARWIDPDQL
DEKMSSSRNI LVKDIHDQPL FLFENQFAEN WFKQKYPDVK LTAKL
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