| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1114 |
|---|
| Symbol | |
|---|
| ID | 5188586 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | - |
|---|
| Start bp | 1178809 |
|---|
| End bp | 1179984 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640590953 |
|---|
| Product | HK97 family phage major capsid protein |
|---|
| Protein accession | YP_001271708 |
|---|
| Protein GI | 148544338 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
|---|
| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAATTA ATGAATTAAA TGATGCTTGG ATTGCCAAGG GTCAAGAAGT ATCTGATTTA
AACAACAAGT TAAATGCTGC TGTTCTTGAT GACAATTTCA CTAAAGACAA GTTTGCTGAA
TTAAAGGAAC AACGTGATAA CGCTAAAATT CAACGAGATG CTATTAAGGA TCAGCTTGAC
GAAGCACGCG CTCAAAAAGT TAAGGCTATG AAGTCTGAAG ACAAGAAGCC TTTAAACAAA
AAAGAAATGG ATATTAAAGA CCAATTTGTT CGTGAATTCA AGGACATGGT TACTTCTGGT
AAGACTGGCA CGGGTAATGG TGGCCTAACT ATTCCGGACG ATATTCAATA CGCTATTCAT
CAACTCGTTC GTCAATTTGC CACGTTACAA AACTTGGTAA ATGTTGAATC TGTTACTACA
ACTACCGGTA CACGGACATA TGAAAAACTA AGTGACATTA CACCAATGAC CGATTTAGAT
GATGAAACAG CTACTATTCC AGATATGGAC GATCCAGAAT TAACACTTAT TAAGTATGCT
ATTCATCGAT ACGCAGCAAT TCAAACTGTT ACTAACAGTC TTTTAAAGGA TACTGTCGAA
AACATCCTTG CTTGGTTGTC AAACTGGGTA GCAAAGAAGG TAACTGTTAC TCGTAATGCT
AAGATTATCG AAGCAATGGG TAAGCCAGCT AAGAAGCCTA CTATCGCAAG CTTTGATGAT
ATCAAAGATC TAGAAAATAA CACGTTAGAT CCGGCGATTA TGTCCAGTTC AAGTTTCGTT
ACTAATCAAT CCGGTTATAA TGTCCTTTCT AAGGTTAAGG ACGCTCAAGG ACGTTATATG
CTTCAACGTG ACGTAACCCA ACCAGATGTG TACCGTTTAG ATGGTAAGAC TATCACCGTA
GTTGCTGACA AATGGTTACC TGACGTAGCG GCTGGCACTC ACCCGCTTTA CTTTGGTGAC
TTGAAGCAAG GAATTACGCT TTATGATCGT GAGCATATGT CATTGCTTTC AACCAATATT
GGTGCTGGCG CATTTGAACA TGATCTTTAC AAAGTGCGGG TTATTGACCG GTTTGACGTT
GAAGTAATTG ATGATGGTGC TTGGGCTACT GCTTCATTCA AGGCTGTTGC CAACCAGCAA
GCAACCACTC CAGAAGCTTC TGGTAAGACT GCCTAA
|
|---|
| Protein sequence | MGINELNDAW IAKGQEVSDL NNKLNAAVLD DNFTKDKFAE LKEQRDNAKI QRDAIKDQLD
EARAQKVKAM KSEDKKPLNK KEMDIKDQFV REFKDMVTSG KTGTGNGGLT IPDDIQYAIH
QLVRQFATLQ NLVNVESVTT TTGTRTYEKL SDITPMTDLD DETATIPDMD DPELTLIKYA
IHRYAAIQTV TNSLLKDTVE NILAWLSNWV AKKVTVTRNA KIIEAMGKPA KKPTIASFDD
IKDLENNTLD PAIMSSSSFV TNQSGYNVLS KVKDAQGRYM LQRDVTQPDV YRLDGKTITV
VADKWLPDVA AGTHPLYFGD LKQGITLYDR EHMSLLSTNI GAGAFEHDLY KVRVIDRFDV
EVIDDGAWAT ASFKAVANQQ ATTPEASGKT A
|
|---|
| |