| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0956 |
|---|
| Symbol | |
|---|
| ID | 5188182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | - |
|---|
| Start bp | 1014062 |
|---|
| End bp | 1014754 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640590787 |
|---|
| Product | SNARE associated Golgi protein |
|---|
| Protein accession | YP_001271555 |
|---|
| Protein GI | 148544185 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0398] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAGC GTAAATTAAA TAAAACGTGG CTGATCGTTG GCGCCATTAT CCTTGCTGTC
ATCGTTCTCT ACTTCATTTA TCGAACATAT AAGCCAGAAA TTAATCTGTT GCTAGATTTT
AATGCTCATA ATAAGGCTAA ACTTCTCCAT ATGATTAGAA GTCATGGGTT TACAGACATC
TTTCTTCTTA TAGCTTTAAT CGGTATCCTA AATGCGATTC CGGGAATGTC TAATTCCGTT
GTTTGTATCT TTGCTGGGTT ATGTTATGGG CCAGTTGTTG GTTTTCTGAT TAATTGGGTT
GGAAATATTT TAGGAAATTC TACTGTAATG AGTATAATTC GTAAAATCAA CCTCTCCAAA
CGGGTAAAGA AAAACAAAAT CCTTCATTAC CTCTTGCAAC AAAAGCATCC GTTAATTGCA
CTTACCATCG GTTTTATGAT TCCGGTTATC CCTAGTGTAC TTGTAAACTA CGCTGGTGCC
CGCTTAAATG TTAGTCGGAA ACACTACTTG GCGATGGTAA CCGTGGGCAT GGCTCCGACT
TCATTTCTCT ATGCCTTTGG TGGGGATGCT ATTTTCAAGG GTAATATTAG ACGACTGATC
GGTGTCGCAA TCGCTATTTT AATTCTAATT GGCTGTTATT TACTCGTTCG CAAAATCTGG
CAAAACCATG AAGAAAAAGC AGCAACAAAA TAA
|
|---|
| Protein sequence | MKERKLNKTW LIVGAIILAV IVLYFIYRTY KPEINLLLDF NAHNKAKLLH MIRSHGFTDI
FLLIALIGIL NAIPGMSNSV VCIFAGLCYG PVVGFLINWV GNILGNSTVM SIIRKINLSK
RVKKNKILHY LLQQKHPLIA LTIGFMIPVI PSVLVNYAGA RLNVSRKHYL AMVTVGMAPT
SFLYAFGGDA IFKGNIRRLI GVAIAILILI GCYLLVRKIW QNHEEKAATK
|
|---|
| |