Gene Lreu_0858 details

Gene Information

• Locus tag: Lreu_0858
• ID: 5189855
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Lactobacillus reuteri DSM 20016
• Kingdom: Bacteria
• Replicon accession: NC_009513
• Strand: +
• Start bp: 910618
• End bp: 911067
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 640590690
• Product: toxin secretion/phage lysis holin
• Protein accession: YP_001271458
• Protein GI: 148544088
• COG category: [R] General function prediction only
• COG ID: [COG4824] Phage-related holin (Lysis protein)
• TIGRFAM ID: [TIGR01593] toxin secretion/phage lysis holin

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.00163549
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAACAA TGCACTTCTT ACTTGCAATG GCTCCACCCC CGTATCATCA ACAGTATTTT 
CAGCATTTTC AAGGAATGGA AGATAACTGG ATAATATGGC TTTTCGTGTG GGTAATTATC 
ATTGACATAA TAACAGGGAC GGCAAGGAGT TTAGTAACGC ATCATACAAC ATCAACTAAA 
GGCACATCAG GCTTAATCAA GCATGGCATC CTATTAATAA TAATCCTGAC GCTTTATCCA 
ATGCTTGATA TTAATGGTAT GAAAAGCGCC GGCGATACCT TTACGATGTT TTATGTATTA 
TTCTATGCTG TTTCAATAAT TGAGAATTGC GGACAAATGG GTCTACCTAT CCCAACATGG 
TTGAAAAAAT ATATCTATAA ACTATCGGAT GAATATAACG ACGATTCTCA AACTAATAAT 
AAGAAAGGAG TAAATGATAG TGAAAAATAA 

 

Protein sequence

MQTMHFLLAM APPPYHQQYF QHFQGMEDNW IIWLFVWVII IDIITGTARS LVTHHTTSTK 
GTSGLIKHGI LLIIILTLYP MLDINGMKSA GDTFTMFYVL FYAVSIIENC GQMGLPIPTW 
LKKYIYKLSD EYNDDSQTNN KKGVNDSEK