| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0642 |
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| Symbol | |
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| ID | 5188826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus reuteri DSM 20016 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009513 |
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| Strand | + |
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| Start bp | 709944 |
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| End bp | 710996 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640590475 |
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| Product | PDZ domain-containing protein |
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| Protein accession | YP_001271244 |
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| Protein GI | 148543874 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3480] Predicted secreted protein containing a PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00000440565 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGC AAGATAATGT AATATTACGA CGAATAGGAA TTATTTTAGG GCTTGTCCTT
TTACTAGGCT GCTTTTTGTT CTGGCCCCTA AATTCCTATA TCGAAAGTCC GGGAACGGCA
GCTGATTTAC AGTCTTTTGT TAAAATAAAG AGACACCCCG ATCGATATAA GGGGAGTTTT
ATGTTGACAT CGGTGGCGAT TCAACGCGCC CATCCTGCAA CATATTTATA TGCCAAAATG
ATGCCCTATA TGTCAATCGA GAGTGCAGAG GATGTAACTG GCGGTCAAAA TAGTGCAACG
TATGACCGTG TCCAAAAATT TTATATGGAT AGCTCAATTA ACGAGGCAAT TGCAGTTGCT
TACAATGCCG CTCACCAAAA AGTAACGCGA CGCTATCTAG GAATTTATGT ATTGCAAGTT
CAGCCTAATT CTAAATTCAA ACATGATATT CATGTTGGGG ATACAATTAC AAAAGTAGAT
GGTCATCACT TTAATACCGC TCAAGGCTTT CAAAAATATA TTGGTGCTAA AAAAGTTGGC
ACTCCGTTAG CGGTTACTTA TACTCGAGAT GGGAAAACTA AAACTGTCAC TCATCCGCTT
GTTAAAATTG CTAATACTAA TAAGCCGGGA ATTGGGATCA TCCTTACTAA CAATATGCAA
GTTAAGACTA AGATCCCAGT AAAGGTTGAT GCTGGTCAAT ACGGTGGGCC ATCCGGTGGC
TTAATGTTCA GTTTACAAAT ATATCAACAA ATTAGTGGAA AAGATTTGCA ACGGGGACGT
AAAATTGCCG GAACTGGAAC GATAAATTCA GACGGGACCG TTGGAGAAAT TGGTGGAATT
GACAAGAAAG TAATCGCCGC GCACCGTGCA GGAGCCACTA TTTTCTTTGC CCCTTATATA
AAACCAACGA AAGAGATTCT TAAGTATGAA GAAGGTCATC TGACTAATTA TCAAATGGCT
AAAAAAGCAG CTAAAAAATA TGCACCGGGA ATGAAGGTTG TCCCAGTCAC TTCCTTTGAT
GACGCGGTGA AATATTTACA AACGCATAAG TAA
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| Protein sequence | MKKQDNVILR RIGIILGLVL LLGCFLFWPL NSYIESPGTA ADLQSFVKIK RHPDRYKGSF
MLTSVAIQRA HPATYLYAKM MPYMSIESAE DVTGGQNSAT YDRVQKFYMD SSINEAIAVA
YNAAHQKVTR RYLGIYVLQV QPNSKFKHDI HVGDTITKVD GHHFNTAQGF QKYIGAKKVG
TPLAVTYTRD GKTKTVTHPL VKIANTNKPG IGIILTNNMQ VKTKIPVKVD AGQYGGPSGG
LMFSLQIYQQ ISGKDLQRGR KIAGTGTINS DGTVGEIGGI DKKVIAAHRA GATIFFAPYI
KPTKEILKYE EGHLTNYQMA KKAAKKYAPG MKVVPVTSFD DAVKYLQTHK
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