| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0378 |
|---|
| Symbol | |
|---|
| ID | 5188808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 427369 |
|---|
| End bp | 428253 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640590183 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001270984 |
|---|
| Protein GI | 148543614 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.150141 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA AGATAATTAA TTTCGAATTA GTTTTAATAT TGCTTTTACC TTTAATTGTT
TTTACAAGTG GCTTTAAGAT TCAAAATGAG AATTACCGGG CGAACCACAC TGATACGTGG
GAAAGAATAA AGAAGCGGGG AACATTACTT ATCGGGGTTG ATGATACTTT TGTTCCAATG
GATTTTCGGA AGAAGAATGG TCAACTGGTT GGTTATGATG TTGATTTATC CCGCGCAGTT
GCGAAAGTTT TAGGATTGAA AGCTGATTTT CAGTCAATTG ATTGGTCAAT GAAGGAAACC
GAATTAAAAA ATGGCACAAT TGATTGTATT TGGAACGGCT ATACAGCTAC TCCTTCCCGA
CAAAAACGAA TTGCATTTAG TCGGGTTTAT GAACTCTCTG GGCAATCATT AGTGGTGCGG
AAAAATAGTA AAATTAAAAA TTTCAAGGAT ATGAAAGGAA AGGTATTAGG AATTCAAGAA
AGTTCAACCG CTCAAACTGA TTTTGACAAA TATCCTCAAG TATTGAAGAG GCTAGTTAAA
GGACAAAAGC CAATTCTTTA TCAAGATAAC TCAAGTGCTT TCATGGATCT GCAAGCAGGC
CGAACACAAG GAGTACTTGC CGGGACTGTC TATGCCGGCT ATTATGCGAC TCACATTGCA
AATAATAATA ATTATAAATT GATTTCAGCA TCTGCTTATC CTGCAGACCG AGTTGCAATT
GGAATGAGGA AGGGGGACCG GACGCTTATT AATAAAATTA ACTATGCTCT TGGGGTTCTT
CAAAAAGATG GTACCTTACG ACGGATTAAT AAAAAATGGC TAGGAATTAA TAGTAATTAT
CTGGGACCGG TTGCTGAATT TCAAAAATCC AACAATAATC GTTAA
|
|---|
| Protein sequence | MKKKIINFEL VLILLLPLIV FTSGFKIQNE NYRANHTDTW ERIKKRGTLL IGVDDTFVPM
DFRKKNGQLV GYDVDLSRAV AKVLGLKADF QSIDWSMKET ELKNGTIDCI WNGYTATPSR
QKRIAFSRVY ELSGQSLVVR KNSKIKNFKD MKGKVLGIQE SSTAQTDFDK YPQVLKRLVK
GQKPILYQDN SSAFMDLQAG RTQGVLAGTV YAGYYATHIA NNNNYKLISA SAYPADRVAI
GMRKGDRTLI NKINYALGVL QKDGTLRRIN KKWLGINSNY LGPVAEFQKS NNNR
|
|---|
| |