| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4624 |
|---|
| Symbol | |
|---|
| ID | 5195429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5185357 |
|---|
| End bp | 5187750 |
|---|
| Gene Length | 2394 bp |
|---|
| Protein Length | 797 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640589107 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001269928 |
|---|
| Protein GI | 148549826 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.185618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000000123032 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTA CCCCGGTTCC ACAGCGCCAC CCCTTGAGTC GTGCCCTGCA TGCTGCACTG
TTGGGCCTGG CAGTCAGCAC CTACGCACTG CCGTCGCTTG CACAGCCTTT GAGCGCTGAT
CACAACAACC CGCTCAAGCA GTGGAGCATT CCCGCGGGCC CGCTGGCGCC GGCACTGGAC
CGCTTTGCAC GCGAGGCGGG CATCAGCCTT TCGTTCGATG CGCAGAACGT GGCCAACCGC
AATACCAACG GGGTGCAGGG CGCGCTGGAT ACACAGTCGG CGCTGTCGTC GCTGCTGCGC
GGAACCGAGT TGCAGTTTGA GCCGCAGGGC CCCAATGCGT ACCTGGTAAT ACCGCAGCCT
AAGCCTACCG GCCCGCTGGA ACTGGGCGCG ACCGAGGACT ACCGCCTAGC GCCAGTCATC
ATCAATGCCA AGGTCAAGGC CAGTGCCGAC GATGACGCCA ACTCGGTGGT TGCCAAGGAG
CTGTGGGTTG GCGGCAAGGT AGCGACCAGC ATCCTCAACA CGCCCGCGTC CGTGTCTGTG
GTGACCAACA AGGAAATGCA GCAGCGCAGC GTCAGCACCA CCGAAGAGGC GCTGCAGTAC
ACCCCTGGCG TGGTCAGCGA CTACTACGGT TCGGACGATC GCAACGACTA CTTCCTGATC
CGCGGCTTCC AGGCCACCAC CTACCGAGAC GGCCTGACCC TCAGCTCGAT GCGTGGTGTG
CGCGAAGACC CTTACGCCTA CGAGCGTATC GAAATTCTGC GGGGTGCCAA CTCCACCCTG
TTCGGCCCGG CAGACCCGGG TGGCTCGGTC AACTTCGTGA CCAAGCAACC GCGCTTCGAG
AAGTTTGGCC AAGGCTACGT GACCTACGGC TCCTATGACC ATGCCGAAAC CGGGATTGAT
GTAGGCGATG CGCTGAACGA CGAACAAACC CTGGCCGGCC GCTTCACGGC CAAGATGCAG
AACAGCGACC GCGAGTACGA CCACTCCCAG GACGACAACC GCTTCGTGAT GGGCGGCCTG
ACCTGGGCGC CAACCGACTT CACCTCGGCC ACGGTGGTGC TGGATTACCT GAAGACCAAC
AGCTCGCCGA ACAGCGGTGG CTACCCGCTG GACAAGGAGT ACGACCGCAG CGACTTCTAC
GGCGAGCCCG GCTACAACTT CCACGATGTC GAGCGCACCA GCCTCAGCGG CAACATTACC
CATGACTTCG ACAACGGCTT CACCCTGCGC AGCAACCTGC GCTACAGCGA GCTGACCGAT
GACTTCGGCT ATGTCTACCT GAGCGACAAC GCCTCGCGTG TTGGCACCAC CATTCCACGC
TACGTCTTCG GCACCGACAG CGATGCCGAT CAGCTCAATG GCAACTTGAT GCTGCAGTAC
GATGCCCAGT TCGAACACAT CGACAGCAGC ACGCTGGTGG GCGTCGAGTA CCTCGACTCG
ACGACCAAAC AGAGCTCGGT CTACGGCCTG GCGCCCTCCA TCGACATCGC CAACCCGGTA
TTCACCGGCG TGCCAGGCGG CATCACGCCC TATACCCGCA AAAAGAATGA CGCCACCACC
AAGGCGGTTT TCCTGCAGCA GAACCTGTCG TTCTTTGACC GCGTCATCGC GACCGCAGGC
GTGCGTAACG ACTCGATGGA CCTGTCGAGC AAGGAATACA CCGGTGGCGA GCAGACGGAA
AAGGACAACT TCTCCGAAAC CTCCTACCGC GCGGCACTGA CCTATATCGT CAACGATGAA
GTGTCGACCT ACGTGAGCAT GGTGGAGTCC GTCTCGCCCC CGCAAGTAGG CGTTACCCCG
CAGACCGGCA AGCAATACGA AGTGGGCATC AAGTATTCGC CCATGGGCAT GGACGCACTC
TTCTCCGCCG CTGTTTATGA CCTGACCCAG GAGAACGTCA CCATCGCAGT GGTGTTGCCA
AGCGGCATCA TCGAGCAGCA GACGGTGGGC GAGTCACGCG TGCGTGGCCT TGACCTGGAA
GCCAAGGCAC AAGTCACGCA AGACATCAGC GTGATTGGTG CTTACTCCTA CATGGAGTCC
GAGGTGCTGC GCGGGTCGCT GTATGACGGC TCTTCCTTGA AGGGCAATGA GTTCACCACG
GCGCCCAAAC ACACCGCATC GCTGTGGAGC TACTACGACA TACCGGGCAC TGACGTGAGC
GTCGGCCTGG GCGCGCGGTA TGTGGGGGCG TACTACATGG ATGCTGCCAA TACCAAGAAG
AGCGATGGGA CCACGTTGTT TGATGCGGCG CTGAACTACA AGATCGCCAA AGGGACCGAC
CTGGCGCTGA ATGTGAGCAA CCTGTTCGAT GAGCAGCATG TGGTGGGGTC GGGGACGGCG
AATTACTACA ACCCGGGGCG TGAGGTGACG GCGAAGGTGA GTTATAGCTG GTAA
|
|---|
| Protein sequence | MSFTPVPQRH PLSRALHAAL LGLAVSTYAL PSLAQPLSAD HNNPLKQWSI PAGPLAPALD
RFAREAGISL SFDAQNVANR NTNGVQGALD TQSALSSLLR GTELQFEPQG PNAYLVIPQP
KPTGPLELGA TEDYRLAPVI INAKVKASAD DDANSVVAKE LWVGGKVATS ILNTPASVSV
VTNKEMQQRS VSTTEEALQY TPGVVSDYYG SDDRNDYFLI RGFQATTYRD GLTLSSMRGV
REDPYAYERI EILRGANSTL FGPADPGGSV NFVTKQPRFE KFGQGYVTYG SYDHAETGID
VGDALNDEQT LAGRFTAKMQ NSDREYDHSQ DDNRFVMGGL TWAPTDFTSA TVVLDYLKTN
SSPNSGGYPL DKEYDRSDFY GEPGYNFHDV ERTSLSGNIT HDFDNGFTLR SNLRYSELTD
DFGYVYLSDN ASRVGTTIPR YVFGTDSDAD QLNGNLMLQY DAQFEHIDSS TLVGVEYLDS
TTKQSSVYGL APSIDIANPV FTGVPGGITP YTRKKNDATT KAVFLQQNLS FFDRVIATAG
VRNDSMDLSS KEYTGGEQTE KDNFSETSYR AALTYIVNDE VSTYVSMVES VSPPQVGVTP
QTGKQYEVGI KYSPMGMDAL FSAAVYDLTQ ENVTIAVVLP SGIIEQQTVG ESRVRGLDLE
AKAQVTQDIS VIGAYSYMES EVLRGSLYDG SSLKGNEFTT APKHTASLWS YYDIPGTDVS
VGLGARYVGA YYMDAANTKK SDGTTLFDAA LNYKIAKGTD LALNVSNLFD EQHVVGSGTA
NYYNPGREVT AKVSYSW
|
|---|
| |